scaffold_102587.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 scaffold_102587.1 T005084_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF019
M01092_2.00 		Arabidopsis thaliana
CRCCGRCV
BGYCGGYG		 PBM
Lambert et al.(2019)
pTH11534 		0.848 1.000
ERF019
M06571_2.00 		Arabidopsis thaliana
HDYCACCGACAHNNN
NNNDTGTCGGTGRHD		 Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a 		0.848 1.000
ERF019
M06572_2.00 		Arabidopsis thaliana
DYCACCGHCRHHDYC
GRHDDYGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g22810_col 		0.848 1.000
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_102587.1 AP2 11 62

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29938.m000611 Ricinus communis 29938.m000611 I 0.713
Bo2g072950 Brassica oleracea Bo2g072950 I 0.838
Bo5g038890 Brassica oleracea Bo5g038890 I 0.838
Bo6g113060 Brassica oleracea Bo6g113060 I 0.829
Bo7g057680 Brassica oleracea Bo7g057680 I 0.830
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.826
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.846
Bra007974 Brassica rapa Bra007974 I 0.838
Bra012345 Brassica rapa Bra012345 I 0.838
Bra016133 Brassica rapa Bra016133 I 0.806
Bra024539 Brassica rapa Bra024539 I 0.838
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.848
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.826
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.848
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.826
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.707
Ca_15055 Cicer arietinum Ca_15055 I 0.701
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.696
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.712
Cla012182 Citrullus lanatus Cla012182 I 0.703
ERF019 Arabidopsis thaliana AT1G22810 D 0.848
ERF020 Arabidopsis thaliana AT1G71520 I 0.826
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.749
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.686
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.818
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.694
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.692
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.701
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.700
mgf010891m Mimulus guttatus mgf010891m I 0.688
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.708
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.712
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.707
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.678
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.678
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.705
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.705
TCM_036224 Theobroma cacao TCM_036224 I 0.750
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.840
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.827