CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

scaffold_700899.1 *(Arabidopsis lyrata)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	scaffold_700899.1	T005112_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF043 M01627_2.00	Arabidopsis thaliana	YRCCGACA	TGTCGGYR	PBM Weirauch et al.(2014) pTH7413	0.820	1.000
ERF043 M06651_2.00	Arabidopsis thaliana	NNYCACCGACANHNNN	NNNDNTGTCGGTGRNN	Dap-seq OMalley et al.(2016) At4g32800_colamp_a	0.820	1.000
ERF043 M06652_2.00	Arabidopsis thaliana	NNYCACCGACANHNNH	DNNDNTGTCGGTGRNN	Dap-seq OMalley et al.(2016) At4g32800_col	0.820	1.000
ERF034 M06614_2.00	Arabidopsis thaliana	NHNYCACCGACANHD	HDNTGTCGGTGRNDN	Dap-seq OMalley et al.(2016) At2g44940_col_a	0.788	0.900
ERF034 M06615_2.00	Arabidopsis thaliana	NDBCACCGACANH	DNTGTCGGTGVHN	Dap-seq OMalley et al.(2016) At2g44940_colamp_a	0.788	0.900
ERF035 M06631_2.00	Arabidopsis thaliana	YCACCGACANWDNH	DNHWNTGTCGGTGR	Dap-seq OMalley et al.(2016) AT3G60490_col_a	0.774	0.860
ERF035 M06632_2.00	Arabidopsis thaliana	NNBCACCGACAHWNNN	NNNWDTGTCGGTGVNN	Dap-seq OMalley et al.(2016) AT3G60490_colamp_a	0.774	0.860
Q8LKX0_MAIZE M09722_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DBF2_01	0.748	0.860
AT3G16280 M06618_2.00	Arabidopsis thaliana	NDNCACCGACANHN	NDNTGTCGGTGNHN	Dap-seq OMalley et al.(2016) AT3G16280_col_a	0.739	0.840
AT3G16280 M06619_2.00	Arabidopsis thaliana	BCACCGACAHWNNN	NNNWDTGTCGGTGV	Dap-seq OMalley et al.(2016) AT3G16280_colamp_a	0.739	0.840
TINY M01094_2.00	Arabidopsis thaliana	NHRCCGACAN	NTGTCGGYDN	PBM Lambert et al.(2019) pTH11541	0.711	0.880
TINY M06669_2.00	Arabidopsis thaliana	HNYCRCCGACANHDN	NHDNTGTCGGYGRND	Dap-seq OMalley et al.(2016) TINY_col_a	0.711	0.880
ERF037 M00843_2.00	Arabidopsis thaliana	NRCCGACRN	NYGTCGGYN	PBM Franco-Zorrilla et al.(2014) At1g77200	0.710	0.860
ERF037 M06599_2.00	Arabidopsis thaliana	YCRCCGACAHHNNH	DNNDDTGTCGGYGR	Dap-seq OMalley et al.(2016) AT1G77200_col_a	0.710	0.860
ERF037 M06600_2.00	Arabidopsis thaliana	NNYACCGACAHN	NDTGTCGGTRNN	Dap-seq OMalley et al.(2016) AT1G77200_colamp_a	0.710	0.860
Q5MAR7_BRANA M09742_2.00	Brassica napus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREBIII1_01	0.709	0.840
Q3HS44_BRANA M09741_2.00	Brassica napus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREBIII2_01	0.709	0.840
Q3HS43_BRANA M09740_2.00	Brassica napus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREBIII3_01	0.709	0.840
ERF039 M01620_2.00	Arabidopsis thaliana	NNRCCGACDN	NHGTCGGYNN	PBM Weirauch et al.(2014) pTH8101	0.699	0.840
ERF039 M06635_2.00	Arabidopsis thaliana	HNNHDYCRCCGMCRN	NYGKCGGYGRHDNND	Dap-seq OMalley et al.(2016) At4g16750_col_a	0.699	0.840
ERF039 M06636_2.00	Arabidopsis thaliana	NNNNNNYCACCGACAHH	DDTGTCGGTGRNNNNNN	Dap-seq OMalley et al.(2016) At4g16750_colamp_a	0.699	0.840
ERF038 M06608_2.00	Arabidopsis thaliana	NHNHHDYCRCCGACA	TGTCGGYGRHDDNDN	Dap-seq OMalley et al.(2016) ERF38_col_a	0.699	0.820
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
scaffold_700899.1	AP2	17	68	PVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGT

Links
Other AP2 family TFs
Other *Arabidopsis lyrata* TFs

457 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA005293	Oryza indica	BGIOSGA005293	N	0.000
BRADI1G29920	Brachypodium distachyon	BRADI1G29920	N	0.000
BRADI3G60870	Brachypodium distachyon	BRADI3G60870	N	0.000
GRMZM2G073892	Zea mays	GRMZM2G073892	N	0.000
GRMZM2G402862	Zea mays	GRMZM2G402862	N	0.000
LPERR02G31960	Leersia perrieri	LPERR02G31960	N	0.000
MLOC_14243	Hordeum vulgare	MLOC_14243	N	0.000
OBART02G38520	Oryza barthii	OBART02G38520	N	0.000
OGLUM02G39710	Oryza glumaepatula	OGLUM02G39710	N	0.000
OLONG_006885	Oryza longistaminata	OLONG_006885	N	0.000
OMERI02G36320	Oryza meridionalis	OMERI02G36320	N	0.000
ONIVA02G41380	Oryza nivara	ONIVA02G41380	N	0.000
OPUNC02G35740	Oryza punctata	OPUNC02G35740	N	0.000
OPUNC06G25350	Oryza punctata	OPUNC06G25350	N	0.000
ORGLA02G0337900	Oryza glaberrima	ORGLA02G0337900	N	0.000
ORGLA06G0234600	Oryza glaberrima	ORGLA06G0234600	N	0.000
ORUFI02G40230	Oryza rufipogon	ORUFI02G40230	N	0.000
OS02G0833600	Oryza sativa	OS02G0833600	N	0.000
OS06G0719500	Oryza sativa	OS06G0719500	N	0.000
OS06G0720900	Oryza sativa	OS06G0720900	N	0.000
OS06G0724000	Oryza sativa	OS06G0724000	N	0.000
Pavir.J00689	Panicum virgatum	Pavir.J00689	N	0.000
Pavir.J01346	Panicum virgatum	Pavir.J01346	N	0.000
Pavir.J04759	Panicum virgatum	Pavir.J04759	N	0.000
Sb04g038600	Sorghum bicolor	Sb04g038600	N	0.000
Sb10g030400	Sorghum bicolor	Sb10g030400	N	0.000
Si007412m.g	Setaria italica	Si007412m.g	N	0.000
Si023448m.g	Setaria italica	Si023448m.g	N	0.000
Traes_7AL_3ED7A9663	Triticum aestivum	Traes_7AL_3ED7A9663	N	0.000
Traes_7DL_EECCC4DBF	Triticum aestivum	Traes_7DL_EECCC4DBF	N	0.000

scaffold_700899.1 (Arabidopsis lyrata) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

457 Related TFs

scaffold_700899.1 **(Arabidopsis lyrata)
AP2**