CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SELMODRAFT_80895 *(Selaginella moellendorffii)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	SELMODRAFT_80895	T005222_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.785	0.750
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.776	0.731
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.776	0.731
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.771	0.712
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.771	0.712
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.771	0.712
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.756	0.731
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.751	0.750
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.751	0.750
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.751	0.750
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.751	0.750
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.751	0.750
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.745	0.712
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.744	0.712
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.739	0.692
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.739	0.692
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.739	0.692
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.735	0.769
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.733	0.731
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.728	0.731
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.728	0.731
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.725	0.615
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.721	0.673
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.718	0.712
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.718	0.712
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.718	0.712
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.718	0.712
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.711	0.731
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.711	0.654
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.710	0.615
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.710	0.731
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.710	0.731
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.706	0.635
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.706	0.635
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.706	0.654
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.701	0.731
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.701	0.731
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.701	0.731
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.701	0.615
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.700	0.692
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.697	0.654
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.697	0.654
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.693	0.596
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.692	0.654
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.692	0.673
ERF098 M01618_2.00	Arabidopsis thaliana	NNGCCGNC	GNCGGCNN	PBM Weirauch et al.(2014) pTH8259	0.692	0.673
ERF13 M01615_2.00	Arabidopsis thaliana	VGCCGSCD	HGSCGGCB	PBM Weirauch et al.(2014) pTH7283	0.692	0.673
ERF13 M06612_2.00	Arabidopsis thaliana	NHDBMGCCGCCDYHD	HDRHGGCGGCKVHDN	Dap-seq OMalley et al.(2016) ERF13_colamp_a	0.692	0.673
ERF13 M06613_2.00	Arabidopsis thaliana	HDBMGCCGCCDYHDN	NHDRHGGCGGCKVHD	Dap-seq OMalley et al.(2016) ERF13_col_b	0.692	0.673
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.691	0.692
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.691	0.692
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.691	0.692
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.690	0.692
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.690	0.692
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.686	0.692
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.686	0.692
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.681	0.692
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.681	0.692
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.681	0.692
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.680	0.654
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.680	0.596
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.680	0.596
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EFJ34323	AP2	102	154	RQYRGVRRRPWGKFAAEIRDSTKQGARIWLGTFETAEEAAIAYDQAAFKMRGR

Links
Other AP2 family TFs
Other *Selaginella moellendorffii* TFs

1797 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O3_06596	Capronia epimyces	A1O3_06596	I	0.000
A1O7_07897	Cladophialophora yegresii	A1O7_07897	I	0.000
AB00609.1	Alternaria brassicicola	AB00609.1	I	0.000
ACLA_074570	Aspergillus clavatus	CADACLAG00006464	I	0.000
ACRE_046260	Acremonium chrysogenum	ACRE_046260	I	0.000
AFUA_2G15620	Aspergillus fumigatus	CADAFUAG00004842	I	0.000
ANIA_07610	Aspergillus nidulans	CADANIAG00000725	I	0.000
AUEXF2481DRAFT_46715	Aureobasidium subglaciale	AUEXF2481DRAFT_46715	I	0.000
BAUCODRAFT_304562	Baudoinia compniacensis	BAUCODRAFT_304562	I	0.000
Bcin12g02060	Botrytis cinerea	Bcin12g02060	I	0.000
CADAFLAG00003424	Aspergillus flavus	CADAFLAG00003424	I	0.000
CADANGAG00012260	Aspergillus niger	CADANGAG00012260	I	0.000
CADAORAG00005871	Aspergillus oryzae	CADAORAG00005871	I	0.000
CFIO01_09528	Colletotrichum fioriniae	CFIO01_09528	I	0.000
CH063_12953	Colletotrichum higginsianum	CH063_12953	I	0.000
CMQ_4177	Grosmannia clavigera	CMQ_4177	I	0.000
COCC4DRAFT_183452	Bipolaris maydis	COCC4DRAFT_183452	I	0.000
COCC4DRAFT_71230	Bipolaris maydis	COCC4DRAFT_71230	I	0.000
COCCADRAFT_90908	Bipolaris zeicola	COCCADRAFT_90908	I	0.000
COCMIDRAFT_102049	Bipolaris oryzae	COCMIDRAFT_102049	I	0.000
COCMIDRAFT_81700	Bipolaris oryzae	COCMIDRAFT_81700	I	0.000
COCSADRAFT_166376	Bipolaris sorokiniana	COCSADRAFT_166376	I	0.000
COCSADRAFT_76883	Bipolaris sorokiniana	COCSADRAFT_76883	I	0.000
COCVIDRAFT_37179	Bipolaris victoriae	COCVIDRAFT_37179	I	0.000
COCVIDRAFT_89906	Bipolaris victoriae	COCVIDRAFT_89906	I	0.000
CSUB01_03920	Colletotrichum sublineola	CSUB01_03920	I	0.000
CTHT_0038840	Chaetomium thermophilum	CTHT_0038840	I	0.000
DOTSEDRAFT_73784	Dothistroma septosporum	DOTSEDRAFT_73784	I	0.000
DOTSEDRAFT_74570	Dothistroma septosporum	DOTSEDRAFT_74570	I	0.000
DRE_02232	Drechslerella stenobrocha	DRE_02232	I	0.000
estExt_fgenesh1_pg.C_40955	Cryphonectria parasitica	estExt_fgenesh1_pg.C_40955	I	0.000
estExt_Genewise1Plus.C_120594	Neurospora discreta	estExt_Genewise1Plus.C_120594	I	0.000
estExt_Genewise1Plus.C_150252	Cochliobolus heterostrophus C5	estExt_Genewise1Plus.C_150252	I	0.000
estExt_Genewise1Plus.C_20967	Cochliobolus heterostrophus C5	estExt_Genewise1Plus.C_20967	I	0.000
EURHEDRAFT_497889	Aspergillus ruber	EURHEDRAFT_497889	I	0.000
e_gw1.00815.24.1	Aspergillus carbonarius	e_gw1.00815.24.1	I	0.000
e_gw1.3.120.1	Cryphonectria parasitica	e_gw1.3.120.1	I	0.000
e_gw1.9.639.1	Mycosphaerella graminicola	e_gw1.9.639.1	I	0.000
F503_01662	Ophiostoma piceae uamh	F503_01662	I	0.000
FFUJ_04566	Fusarium fujikuroi	FFUJ_04566	I	0.000
fgenesh1_pm.C_scaffold_10000002	Mycosphaerella fijiensis	fgenesh1_pm.C_scaffold_10000002	I	0.000
fgenesh1_pm.sca_82_chr10_2_0000188	Nectria haematococca	fgenesh1_pm.sca_82_chr10_2_0000188	I	0.000
FGRRES_17662	Fusarium graminearum	FGRRES_17662	I	0.000
FPSE_07164	Fusarium pseudograminearum	FPSE_07164	I	0.000
G647_02082	Cladophialophora carrionii	G647_02082	I	0.000
GGTG_03663	Gaeumannomyces graminis	GGTG_03663	I	0.000
GLRG_07228	Colletotrichum graminicola	GLRG_07228	I	0.000
GMDG_06572	Pseudogymnoascus destructans	GMDG_06572	I	0.000
GSTUM_00004347001	Tuber melanosporum	GSTUM_00004347001	I	0.000
H072_2001	Dactylellina haptotyla	H072_2001	I	0.000
HMPREF1624_00871	Sporothrix schenckii	HMPREF1624_00871	I	0.000
HMPREF1624_07664	Sporothrix schenckii	HMPREF1624_07664	I	0.000
LEMA_P035060.1	Leptosphaeria maculans	LEMA_P035060.1	I	0.000
M437DRAFT_41113	Aureobasidium melanogenum	M437DRAFT_41113	I	0.000
M438DRAFT_373756	Aureobasidium pullulans	M438DRAFT_373756	I	0.000
MAPG_01170	Magnaporthe poae	MAPG_01170	I	0.000
MBM_00813	Marssonina brunnea	MBM_00813	I	0.000
MGG_01414	Magnaporthe oryzae	MGG_01414	I	0.000
MYCFIDRAFT_190593	Pseudocercospora fijiensis	MYCFIDRAFT_190593	I	0.000
Mycgr3G47382	Zymoseptoria tritici	Mycgr3G47382	I	0.000
MYCTH_2310145	Myceliophthora thermophila	MYCTH_2310145	I	0.000
NechaG96746	Fusarium solani	NechaG96746	I	0.000
NEUTE1DRAFT_80073	Neurospora tetrasperma	NEUTE1DRAFT_80073	I	0.000
OIDMADRAFT_199854	Oidiodendron maius	OIDMADRAFT_199854	I	0.000
Pc21g02790	Penicillium chrysogenum	Pc21g02790	I	0.000
PCH_Pc21g02790	Penicillium rubens	PCH_Pc21g02790	I	0.000
PDE_07674	Penicillium oxalicum	PDE_07674	I	0.000
PEX1_036960	Penicillium expansum	PEX1_036960	I	0.000
PFICI_05114	Pestalotiopsis fici	PFICI_05114	I	0.000
PITC_082180	Penicillium italicum	PITC_082180	I	0.000
PMAA_036650	Talaromyces marneffei	PMAA_036650	I	0.000
PMAA_036650	Penicillium marneffei	PMAA_036650	I	0.000
PODANS_1_23020	Podospora anserina	PODANS_1_23020	I	0.000
PTT_14914	Pyrenophora teres	PTT_14914	I	0.000
PV04_08391	Capronia semiimmersa	PV04_08391	I	0.000
PV05_08952	Exophiala xenobiotica	PV05_08952	I	0.000
PV10_02516	Exophiala mesophila	PV10_02516	I	0.000
PV11_07480	Exophiala sideris	PV11_07480	I	0.000
S40285_05834	Stachybotrys chlorohalonata	S40285_05834	I	0.000
S40288_02557	Stachybotrys chartarum	S40288_02557	I	0.000
S40288_09944	Stachybotrys chartarum	S40288_09944	I	0.000
SAPIO_CDS7493	Scedosporium apiospermum	SAPIO_CDS7493	I	0.000
SBOR_4248	Sclerotinia borealis	SBOR_4248	I	0.000
SEPMUDRAFT_150184	Sphaerulina musiva	SEPMUDRAFT_150184	I	0.000
SEPMUDRAFT_151346	Sphaerulina musiva	SEPMUDRAFT_151346	I	0.000
SETTUDRAFT_31256	Setosphaeria turcica	SETTUDRAFT_31256	I	0.000
SMAC_00770	Sordaria macrospora	SMAC_00770	I	0.000
SNOG_08740	Stagonospora nodorum	SNOG_08740	I	0.000
SNOG_08740	Phaeosphaeria nodorum	SNOG_08740	I	0.000
SPBR_06407	Sporothrix brasiliensis	SPBR_06407	I	0.000
SS1G_08351	Sclerotinia sclerotiorum	SS1G_08351	I	0.000
THITE_2122523	Thielavia terrestris	THITE_2122523	I	0.000
TRIATDRAFT_78601	Trichoderma atroviride	TRIATDRAFT_78601	I	0.000
TRIREDRAFT_122208	Trichoderma reesei	TRIREDRAFT_122208	I	0.000
TRIVIDRAFT_58714	Trichoderma virens	TRIVIDRAFT_58714	I	0.000
TSTA_055480	Talaromyces stipitatus	TSTA_055480	I	0.000
UV8b_3245	Ustilaginoidea virens	UV8b_3245	I	0.000
V499_08073	Pseudogymnoascus pannorum	V499_08073	I	0.000
VDAG_08004	Verticillium dahliae	VDAG_08004	I	0.000
VDBG_01258	Verticillium albo atrum	VDBG_01258	I	0.000
VDBG_01258	Verticillium alfalfae	VDBG_01258	I	0.000
VHEMI00533	Torrubiella hemipterigena	VHEMI00533	I	0.000
VHEMI00604	Torrubiella hemipterigena	VHEMI00604	I	0.000
xlr-1	Neurospora crassa	NCU06971	D	0.000
Z518_06938	Rhinocladiella mackenziei	Z518_06938	I	0.000

SELMODRAFT_80895 (Selaginella moellendorffii) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1797 Related TFs

SELMODRAFT_80895 **(Selaginella moellendorffii)
AP2**