Cla022420 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla022420 T006531_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.867 1.000
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.848 0.960
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.848 0.960
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.721 0.860
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.721 0.860
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.684 0.820
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.684 0.820
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.683 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla022420 AP2 162 213

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

457 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29693.m001968 Ricinus communis 29693.m001968 I 0.000
29905.m000443 Ricinus communis 29905.m000443 I 0.000
30138.m003959 Ricinus communis 30138.m003959 I 0.000
AMTR_s00092p00113360 Amborella trichopoda AMTR_s00092p00113360 I 0.000
AMTR_s00154p00072430 Amborella trichopoda AMTR_s00154p00072430 I 0.000
Aquca_002_00878 Aquilegia coerulea Aquca_002_00878 I 0.000
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.000
BGIOSGA000770 Oryza indica BGIOSGA000770 I 0.000
BGIOSGA020173 Oryza indica BGIOSGA020173 I 0.000
Bo2g161240 Brassica oleracea Bo2g161240 I 0.000
Bo3g004670 Brassica oleracea Bo3g004670 I 0.000
Bo3g055460 Brassica oleracea Bo3g055460 I 0.000
Bo5g152840 Brassica oleracea Bo5g152840 I 0.000
Bo7g098260 Brassica oleracea Bo7g098260 I 0.000
Bostr.13129s0160 Boechera stricta Bostr.13129s0160 I 0.000
Bostr.1460s0130 Boechera stricta Bostr.1460s0130 I 0.000
Bostr.26833s0140 Boechera stricta Bostr.26833s0140 I 0.000
Bra001032 Brassica rapa Bra001032 I 0.000
Bra005967 Brassica rapa Bra005967 I 0.000
Bra012990 Brassica rapa Bra012990 I 0.000
Bra029344 Brassica rapa Bra029344 I 0.000
Bra039158 Brassica rapa Bra039158 I 0.000
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.000
BRADI2G20060 Brachypodium distachyon BRADI2G20060 I 0.000
BRADI2G50687 Brachypodium distachyon BRADI2G50687 I 0.000
BRADI4G01547 Brachypodium distachyon BRADI4G01547 I 0.000
Cagra.0083s0006 Capsella grandiflora Cagra.0083s0006 I 0.000
Cagra.1365s0013 Capsella grandiflora Cagra.1365s0013 I 0.000
Cagra.3823s0015 Capsella grandiflora Cagra.3823s0015 I 0.000
Carubv10001730m.g Capsella rubella Carubv10001730m.g I 0.000
Carubv10014042m.g Capsella rubella Carubv10014042m.g I 0.000
Carubv10026656m.g Capsella rubella Carubv10026656m.g I 0.000
cassava2420.valid.m1 Manihot esculenta cassava2420.valid.m1 I 0.000
cassava29094.valid.m1 Manihot esculenta cassava29094.valid.m1 I 0.000
cassava30483.valid.m1 Manihot esculenta cassava30483.valid.m1 I 0.000
cassava32529.m1 Manihot esculenta cassava32529.m1 I 0.000
cassava46272.m1 Manihot esculenta cassava46272.m1 I 0.000
cassava7638.valid.m1 Manihot esculenta cassava7638.valid.m1 I 0.000
Ca_05033 Cicer arietinum Ca_05033 I 0.000
Ca_11295 Cicer arietinum Ca_11295 I 0.000
Ca_13216 Cicer arietinum Ca_13216 I 0.000
Ca_24196 Cicer arietinum Ca_24196 I 0.000
Ca_24948 Cicer arietinum Ca_24948 I 0.000
chr4.CM0500.330.nd Lotus japonicus chr4.CM0500.330.nd I 0.000
Ciclev10011887m.g Citrus clementina Ciclev10011887m.g I 0.000
Ciclev10014986m.g Citrus clementina Ciclev10014986m.g I 0.000
Ciclev10020626m.g Citrus clementina Ciclev10020626m.g I 0.000
Cla010936 Citrullus lanatus Cla010936 I 0.000
Cla018836 Citrullus lanatus Cla018836 I 0.000
Cla019340 Citrullus lanatus Cla019340 I 0.000
Cla019865 Citrullus lanatus Cla019865 I 0.000
Cla023702 Citrullus lanatus Cla023702 I 0.000
Cucsa.047860 Cucumis sativus Cucsa.047860 I 0.000
Cucsa.111880 Cucumis sativus Cucsa.111880 I 0.000
Cucsa.113300 Cucumis sativus Cucsa.113300 I 0.000
Cucsa.122730 Cucumis sativus Cucsa.122730 I 0.000
Cucsa.198300 Cucumis sativus Cucsa.198300 I 0.000
Cucsa.215290 Cucumis sativus Cucsa.215290 I 0.000
Eucgr.B00608 Eucalyptus grandis Eucgr.B00608 I 0.000
Eucgr.I02038 Eucalyptus grandis Eucgr.I02038 I 0.000
Eucgr.K02535 Eucalyptus grandis Eucgr.K02535 I 0.000
evm.TU.supercontig_14.188 Carica papaya evm.TU.supercontig_14.188 I 0.000
evm.TU.supercontig_94.62 Carica papaya evm.TU.supercontig_94.62 I 0.000
F775_18470 Aegilops tauschii F775_18470 I 0.000
gene04255-v1.0-hybrid Fragaria vesca gene04255-v1.0-hybrid I 0.000
gene26101-v1.0-hybrid Fragaria vesca gene26101-v1.0-hybrid I 0.000
GLYMA04G32324 Glycine max GLYMA04G32324 I 0.000
GLYMA05G00300 Glycine max GLYMA05G00300 I 0.000
GLYMA06G22240 Glycine max GLYMA06G22240 I 0.000
GLYMA08G10350 Glycine max GLYMA08G10350 I 0.000
GLYMA08G27155 Glycine max GLYMA08G27155 I 0.000
GLYMA12G14200 Glycine max GLYMA12G14200 I 0.000
GLYMA13G29160 Glycine max GLYMA13G29160 I 0.000
GLYMA15G09910 Glycine max GLYMA15G09910 I 0.000
GLYMA17G08761 Glycine max GLYMA17G08761 I 0.000
GLYMA18G50371 Glycine max GLYMA18G50371 I 0.000
GLYMA19G03786 Glycine max GLYMA19G03786 I 0.000
Gorai.001G076700 Gossypium raimondii Gorai.001G076700 I 0.000
Gorai.006G009800 Gossypium raimondii Gorai.006G009800 I 0.000
Gorai.008G199700 Gossypium raimondii Gorai.008G199700 I 0.000
Gorai.011G046000 Gossypium raimondii Gorai.011G046000 I 0.000
Gorai.012G048500 Gossypium raimondii Gorai.012G048500 I 0.000
GRMZM2G035944 Zea mays GRMZM2G035944 I 0.000
GRMZM2G120151 Zea mays GRMZM2G120151 I 0.000
GRMZM2G166946 Zea mays GRMZM2G166946 I 0.000
GRMZM2G180568 Zea mays GRMZM2G180568 I 0.000
GSMUA_Achr4G31520_001 Musa acuminata GSMUA_Achr4G31520_001 I 0.000
GSMUA_Achr4G32850_001 Musa acuminata GSMUA_Achr4G32850_001 I 0.000
GSMUA_Achr6G27420_001 Musa acuminata GSMUA_Achr6G27420_001 I 0.000
LjSGA_022391.1 Lotus japonicus LjSGA_022391.1 I 0.000
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.000
LPERR01G06830 Leersia perrieri LPERR01G06830 I 0.000
LPERR01G27380 Leersia perrieri LPERR01G27380 I 0.000
LPERR05G18480 Leersia perrieri LPERR05G18480 I 0.000
LPERR12G15920 Leersia perrieri LPERR12G15920 I 0.000
Lus10032984.g Linum usitatissimum Lus10032984.g I 0.000
Lus10034679.g Linum usitatissimum Lus10034679.g I 0.000
MDP0000120671 Malus domestica MDP0000120671 I 0.000
MDP0000130524 Malus domestica MDP0000130524 I 0.000
MDP0000155433 Malus domestica MDP0000155433 I 0.000
MDP0000199422 Malus domestica MDP0000199422 I 0.000
MDP0000202241 Malus domestica MDP0000202241 I 0.000
MDP0000253526 Malus domestica MDP0000253526 I 0.000
MDP0000287069 Malus domestica MDP0000287069 I 0.000
MDP0000320363 Malus domestica MDP0000320363 I 0.000
MDP0000373350 Malus domestica MDP0000373350 I 0.000
MDP0000388684 Malus domestica MDP0000388684 I 0.000
MDP0000534647 Malus domestica MDP0000534647 I 0.000
MDP0000594000 Malus domestica MDP0000594000 I 0.000
MDP0000617746 Malus domestica MDP0000617746 I 0.000
MDP0000692406 Malus domestica MDP0000692406 I 0.000
MDP0000927314 Malus domestica MDP0000927314 I 0.000
mgf006703m Mimulus guttatus mgf006703m I 0.000
mgf007729m Mimulus guttatus mgf007729m I 0.000
mgf008626m Mimulus guttatus mgf008626m I 0.000
MLOC_14785 Hordeum vulgare MLOC_14785 I 0.000
MLOC_70266 Hordeum vulgare MLOC_70266 I 0.000
MLOC_72581 Hordeum vulgare MLOC_72581 I 0.000
MTR_3g026050 Medicago truncatula MTR_3g026050 I 0.000
MTR_4g079580 Medicago truncatula MTR_4g079580 I 0.000
MTR_4g109660 Medicago truncatula MTR_4g109660 I 0.000
MTR_6g015350 Medicago truncatula MTR_6g015350 I 0.000
OBART01G07230 Oryza barthii OBART01G07230 I 0.000
OBART01G31910 Oryza barthii OBART01G31910 I 0.000
OGLUM01G08160 Oryza glumaepatula OGLUM01G08160 I 0.000
OGLUM01G36040 Oryza glumaepatula OGLUM01G36040 I 0.000
OGLUM05G23780 Oryza glumaepatula OGLUM05G23780 I 0.000
OGLUM12G20570 Oryza glumaepatula OGLUM12G20570 I 0.000
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.000
OMERI01G28950 Oryza meridionalis OMERI01G28950 I 0.000
OMERI05G20240 Oryza meridionalis OMERI05G20240 I 0.000
OMERI12G13760 Oryza meridionalis OMERI12G13760 I 0.000
ONIVA01G09270 Oryza nivara ONIVA01G09270 I 0.000
ONIVA01G36230 Oryza nivara ONIVA01G36230 I 0.000
ONIVA05G23460 Oryza nivara ONIVA05G23460 I 0.000
ONIVA12G17870 Oryza nivara ONIVA12G17870 I 0.000
OPUNC01G06940 Oryza punctata OPUNC01G06940 I 0.000
OPUNC01G30950 Oryza punctata OPUNC01G30950 I 0.000
OPUNC05G20130 Oryza punctata OPUNC05G20130 I 0.000
OPUNC12G17090 Oryza punctata OPUNC12G17090 I 0.000
orange1.1g009938m.g Citrus sinensis orange1.1g009938m.g I 0.000
orange1.1g015799m.g Citrus sinensis orange1.1g015799m.g I 0.000
orange1.1g017725m.g Citrus sinensis orange1.1g017725m.g I 0.000
ORGLA01G0062300 Oryza glaberrima ORGLA01G0062300 I 0.000
ORGLA01G0259400 Oryza glaberrima ORGLA01G0259400 I 0.000
ORGLA05G0197200 Oryza glaberrima ORGLA05G0197200 I 0.000
ORGLA12G0161900 Oryza glaberrima ORGLA12G0161900 I 0.000
ORUFI01G07780 Oryza rufipogon ORUFI01G07780 I 0.000
ORUFI01G35100 Oryza rufipogon ORUFI01G35100 I 0.000
ORUFI05G23910 Oryza rufipogon ORUFI05G23910 I 0.000
OS01G0213800 Oryza sativa OS01G0213800 D 0.000
OS01G0763200 Oryza sativa OS01G0763200 I 0.000
OS05G0513100 Oryza sativa OS05G0513100 I 0.000
Pavir.Ca01337 Panicum virgatum Pavir.Ca01337 I 0.000
Pavir.Ca02949 Panicum virgatum Pavir.Ca02949 I 0.000
Pavir.Cb00038 Panicum virgatum Pavir.Cb00038 I 0.000
Pavir.Ea02793 Panicum virgatum Pavir.Ea02793 I 0.000
Pavir.J03475 Panicum virgatum Pavir.J03475 I 0.000
Pavir.J15913 Panicum virgatum Pavir.J15913 I 0.000
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.000
Pavir.J35609 Panicum virgatum Pavir.J35609 I 0.000
Pavir.J37910 Panicum virgatum Pavir.J37910 I 0.000
PCF5 Oryza indica BGIOSGA002128 I 0.000
PCF8 Oryza indica BGIOSGA037799 I 0.000
PDK_20s1781021g001 Phoenix dactylifera PDK_20s1781021g001 I 0.000
PDK_20s1781021g002 Phoenix dactylifera PDK_20s1781021g002 I 0.000
PGSC0003DMG400001362 Solanum tuberosum PGSC0003DMG400001362 I 0.000
PGSC0003DMG400004082 Solanum tuberosum PGSC0003DMG400004082 I 0.000
PGSC0003DMG400019904 Solanum tuberosum PGSC0003DMG400019904 I 0.000
PGSC0003DMG400024632 Solanum tuberosum PGSC0003DMG400024632 I 0.000
PGSC0003DMG400026568 Solanum tuberosum PGSC0003DMG400026568 I 0.000
PK10344.1 Cannabis sativa PK10344.1 D 0.000
PK16724.1 Cannabis sativa PK16724.1 I 0.000
PK17676.1 Cannabis sativa PK17676.1 I 0.000
Pm010440 Prunus mume Pm010440 I 0.000
Pm016049 Prunus mume Pm016049 I 0.000
Pm024946 Prunus mume Pm024946 I 0.000
POPTR_0004s06440 Populus trichocarpa POPTR_0004s06440 I 0.000
POPTR_0004s11510 Populus trichocarpa POPTR_0004s11510 I 0.000
POPTR_0011s02350 Populus trichocarpa POPTR_0011s02350 I 0.000
POPTR_0015s06980 Populus trichocarpa POPTR_0015s06980 I 0.000
POPTR_0017s13050 Populus trichocarpa POPTR_0017s13050 I 0.000
PRUPE_ppa004612mg Prunus persica PRUPE_ppa004612mg I 0.000
PRUPE_ppa007243mg Prunus persica PRUPE_ppa007243mg I 0.000
PRUPE_ppa014630mg Prunus persica PRUPE_ppa014630mg I 0.000
PTF1 Arabidopsis lyrata fgenesh2_kg.3__146__AT3G02150.2 I 0.000
PTF1 Vitis vinifera VIT_14s0068g00330 I 0.000
SapurV1A.0232s0150 Salix purpurea SapurV1A.0232s0150 I 0.000
SapurV1A.0323s0010 Salix purpurea SapurV1A.0323s0010 I 0.000
SapurV1A.0546s0080 Salix purpurea SapurV1A.0546s0080 I 0.000
SapurV1A.0795s0080 Salix purpurea SapurV1A.0795s0080 I 0.000
SapurV1A.0901s0090 Salix purpurea SapurV1A.0901s0090 I 0.000
SapurV1A.0971s0180 Salix purpurea SapurV1A.0971s0180 I 0.000
SapurV1A.1394s0060 Salix purpurea SapurV1A.1394s0060 I 0.000
SapurV1A.2245s0020 Salix purpurea SapurV1A.2245s0020 I 0.000
SapurV1A.4442s0010 Salix purpurea SapurV1A.4442s0010 I 0.000
SapurV1A.4443s0010 Salix purpurea SapurV1A.4443s0010 I 0.000
Sb03g001940 Sorghum bicolor Sb03g001940 I 0.000
Sb03g035350 Sorghum bicolor Sb03g035350 I 0.000
Sb08g021690 Sorghum bicolor Sb08g021690 I 0.000
Sb09g025340 Sorghum bicolor Sb09g025340 I 0.000
Si002496m.g Setaria italica Si002496m.g I 0.000
Si004564m.g Setaria italica Si004564m.g I 0.000
Si022811m.g Setaria italica Si022811m.g I 0.000
Si022833m.g Setaria italica Si022833m.g I 0.000
Solyc02g065800.1 Solanum lycopersicum Solyc02g065800.1 I 0.000
Solyc02g089020.1 Solanum lycopersicum Solyc02g089020.1 I 0.000
Solyc03g115010.1 Solanum lycopersicum Solyc03g115010.1 I 0.000
Solyc06g069460.1 Solanum lycopersicum Solyc06g069460.1 I 0.000
Solyc08g048370.2 Solanum lycopersicum Solyc08g048370.2 I 0.000
Solyc08g048390.1 Solanum lycopersicum Solyc08g048390.1 I 0.000
TCM_014288 Theobroma cacao TCM_014288 I 0.000
TCM_018809 Theobroma cacao TCM_018809 I 0.000
TCM_029442 Theobroma cacao TCM_029442 I 0.000
TCP13 Arabidopsis thaliana AT3G02150 D 0.000
TCP17 Arabidopsis thaliana AT5G08070 D 0.000
TCP17 Arabidopsis lyrata fgenesh2_kg.6__773__AT5G08070.1 I 0.000
TCP5 Arabidopsis thaliana AT5G60970 D 0.000
TCP5 Arabidopsis lyrata fgenesh2_kg.8__2066__AT5G60970.1 D 0.000
Thhalv10004440m.g Eutrema salsugineum Thhalv10004440m.g I 0.000
Thhalv10014467m.g Eutrema salsugineum Thhalv10014467m.g I 0.000
Thhalv10021021m.g Eutrema salsugineum Thhalv10021021m.g I 0.000
TRAES3BF002700090CFD_g Triticum aestivum TRAES3BF002700090CFD_g I 0.000
Traes_1AL_79B8C6F15 Triticum aestivum Traes_1AL_79B8C6F15 I 0.000
Traes_2AL_EA60A06AC Triticum aestivum Traes_2AL_EA60A06AC I 0.000
Traes_2BL_36A3AB3A2 Triticum aestivum Traes_2BL_36A3AB3A2 I 0.000
Traes_5BL_2DDBAA0C2 Triticum aestivum Traes_5BL_2DDBAA0C2 I 0.000
Traes_5BS_77558D2A3 Triticum aestivum Traes_5BS_77558D2A3 I 0.000
Traes_5DS_643EDFE5B Triticum aestivum Traes_5DS_643EDFE5B I 0.000