CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Carubv10020812m.g *(Capsella rubella)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Carubv10020812m.g	T007900_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.788	0.959
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.788	0.959
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.726	0.776
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.713	0.694
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.711	0.796
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.707	0.694
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.707	0.694
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.707	0.694
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.706	0.694
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.706	0.694
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.702	0.735
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.702	0.735
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.698	0.694
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.698	0.694
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.698	0.755
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.698	0.755
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.694	0.714
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.693	0.755
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.691	0.714
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.688	0.714
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.687	0.673
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.687	0.673
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.687	0.673
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.682	0.735
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.682	0.735
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.680	0.714
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.679	0.633
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Carubv10020812m	AP2	73	124	SRYRGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEDAARAYDLEAKRIRGA

Links
Other AP2 family TFs
Other *Capsella rubella* TFs

937 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ALUE_0000098101	Ascaris lumbricoides	ALUE_0000098101	I
ALUE_0001653201	Ascaris lumbricoides	ALUE_0001653201	I
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0	Meloidogyne floridensis	augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0	I
BTMF_0001220301	Brugia timori	BTMF_0001220301	N
DICVIV_03564	Dictyocaulus viviparus	DICVIV_03564	N
EVEC_0000839201	Enterobius vermicularis	EVEC_0000839201	N
Hba_09392	Heterorhabditis bacteriophora	Hba_09392	N
KGM_02686	Danaus plexippus	KGM_02686	I
LOAG_04282	Loa loa	LOAG_04282	N
nAv.1.0.1.g09239	Acanthocheilonema viteae	nAv.1.0.1.g09239	N
nLs.2.1.2.g02363	Litomosoides sigmodontis	nLs.2.1.2.g02363	N
nOo.2.0.1.g04237	Onchocerca ochengi	nOo.2.0.1.g04237	N
OFLC_0000380401	Onchocerca flexuosa	OFLC_0000380401	I
OFLC_0001260801	Onchocerca flexuosa	OFLC_0001260801	N
PEQ_0000701201	Parascaris equorum	PEQ_0000701201	I
SNAPOd2T00016386001	Oikopleura dioica	SNAPOd2T00016386001	I
SROB_0000822501	Schistosoma rodhaini	SROB_0000822501	I
TCLT_0000479701	Thelazia callipaeda	TCLT_0000479701	N
WBGene00247363	Onchocerca volvulus	WBGene00247363	N
WUBG_03652	Wuchereria bancrofti	WUBG_03652	N

Carubv10020812m.g (Capsella rubella) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

937 Related TFs

Carubv10020812m.g **(Capsella rubella)
AP2**