CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Ciclev10021073m.g *(Citrus clementina)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Ciclev10021073m.g	T008011_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.797	0.918
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.781	0.796
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.777	0.837
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.766	0.816
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.764	0.816
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.764	0.816
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.764	0.816
ERF069 M01604_2.00	Arabidopsis thaliana	NNGCCGNNN	NNNCGGCNN	PBM Weirauch et al.(2014) pTH7550	0.744	0.816
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.735	0.694
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.735	0.694
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.735	0.694
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.724	0.653
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.720	0.776
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.718	0.694
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.718	0.694
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.718	0.694
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.718	0.694
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.717	0.694
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.715	0.694
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.711	0.673
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.708	0.673
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.705	0.735
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.704	0.673
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.704	0.673
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.702	0.673
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.701	0.673
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.701	0.673
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.701	0.673
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.700	0.673
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.696	0.673
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.695	0.673
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.691	0.653
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.691	0.633
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.691	0.633
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.691	0.633
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.688	0.714
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.688	0.714
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.687	0.653
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.687	0.653
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.686	0.653
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.686	0.653
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.686	0.633
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.686	0.633
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.683	0.694
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.683	0.592
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.681	0.612
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.681	0.612
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.681	0.694
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.681	0.694
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.681	0.694
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.680	0.653
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.680	0.653
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.679	0.612
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.679	0.612
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Ciclev10021073m	AP2	119	170	KKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGP

Links
Other AP2 family TFs
Other *Citrus clementina* TFs

1648 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
30167.m000856	Ricinus communis	30167.m000856	I	0.000
AC190734.2_FG003	Zea mays	AC190734.2_FG003	I	0.000
AC233950.1_FG002	Zea mays	AC233950.1_FG002	I	0.000
Aquca_002_01093	Aquilegia coerulea	Aquca_002_01093	I	0.000
BGIOSGA013417	Oryza indica	BGIOSGA013417	I	0.000
BGIOSGA030744	Oryza indica	BGIOSGA030744	I	0.000
Bostr.26959s0002	Boechera stricta	Bostr.26959s0002	I	0.000
Bostr.26959s0184	Boechera stricta	Bostr.26959s0184	I	0.000
Bra004097	Brassica rapa	Bra004097	I	0.000
BRADI1G11060	Brachypodium distachyon	BRADI1G11060	I	0.000
BRADI4G29980	Brachypodium distachyon	BRADI4G29980	I	0.000
BRC2	Arabidopsis thaliana	AT1G68800	I	0.000
BRC2	Arabidopsis lyrata	fgenesh1_pm.C_scaffold_2000933	I	0.000
Cagra.1125s0016	Capsella grandiflora	Cagra.1125s0016	I	0.000
Cagra.1157s0001	Capsella grandiflora	Cagra.1157s0001	I	0.000
Carubv10020487m.g	Capsella rubella	Carubv10020487m.g	I	0.000
Carubv10020555m.g	Capsella rubella	Carubv10020555m.g	I	0.000
cassava10552.m1	Manihot esculenta	cassava10552.m1	I	0.000
Ciclev10024246m.g	Citrus clementina	Ciclev10024246m.g	I	0.000
Cucsa.113660	Cucumis sativus	Cucsa.113660	N	0.000
Cucsa.238090	Cucumis sativus	Cucsa.238090	I	0.000
Cucsa.280880	Cucumis sativus	Cucsa.280880	I	0.000
Cucsa.283930	Cucumis sativus	Cucsa.283930	I	0.000
Eucgr.B00699	Eucalyptus grandis	Eucgr.B00699	I	0.000
Eucgr.K02654	Eucalyptus grandis	Eucgr.K02654	I	0.000
evm.TU.supercontig_179.29	Carica papaya	evm.TU.supercontig_179.29	I	0.000
F775_01449	Aegilops tauschii	F775_01449	N	0.000
F775_01923	Aegilops tauschii	F775_01923	I	0.000
gene03882-v1.0-hybrid	Fragaria vesca	gene03882-v1.0-hybrid	I	0.000
GLYMA04G22407	Glycine max	GLYMA04G22407	I	0.000
GLYMA17G13065	Glycine max	GLYMA17G13065	I	0.000
Gorai.007G007500	Gossypium raimondii	Gorai.007G007500	I	0.000
Gorai.008G285300	Gossypium raimondii	Gorai.008G285300	I	0.000
GRMZM2G031905	Zea mays	GRMZM2G031905	I	0.000
GRMZM2G055024	Zea mays	GRMZM2G055024	I	0.000
GRMZM2G060319	Zea mays	GRMZM2G060319	I	0.000
GRMZM2G062711	Zea mays	GRMZM2G062711	I	0.000
GRMZM2G064628	Zea mays	GRMZM2G064628	I	0.000
GRMZM2G110242	Zea mays	GRMZM2G110242	I	0.000
GRMZM2G166687	Zea mays	GRMZM2G166687	I	0.000
GSMUA_Achr10G25520_001	Musa acuminata	GSMUA_Achr10G25520_001	I	0.000
GSMUA_Achr2G21050_001	Musa acuminata	GSMUA_Achr2G21050_001	I	0.000
GSMUA_Achr2G22480_001	Musa acuminata	GSMUA_Achr2G22480_001	I	0.000
LjSGA_018294.2	Lotus japonicus	LjSGA_018294.2	I	0.000
LPERR03G25950	Leersia perrieri	LPERR03G25950	I	0.000
LPERR08G12880	Leersia perrieri	LPERR08G12880	I	0.000
LPERR09G06870	Leersia perrieri	LPERR09G06870	I	0.000
Lus10021713.g	Linum usitatissimum	Lus10021713.g	I	0.000
Lus10035055.g	Linum usitatissimum	Lus10035055.g	I	0.000
MDP0000224810	Malus domestica	MDP0000224810	N	0.000
MDP0000272980	Malus domestica	MDP0000272980	I	0.000
mgf024687m	Mimulus guttatus	mgf024687m	I	0.000
MLOC_4614	Hordeum vulgare	MLOC_4614	I	0.000
MLOC_58142	Hordeum vulgare	MLOC_58142	I	0.000
MLOC_70116	Hordeum vulgare	MLOC_70116	I	0.000
OB03G38320	Oryza brachyantha	OB03G38320	I	0.000
OBART03G31290	Oryza barthii	OBART03G31290	I	0.000
OBART09G10040	Oryza barthii	OBART09G10040	I	0.000
OGLUM03G31540	Oryza glumaepatula	OGLUM03G31540	I	0.000
OGLUM09G10300	Oryza glumaepatula	OGLUM09G10300	I	0.000
OMERI03G27910	Oryza meridionalis	OMERI03G27910	I	0.000
OMERI08G12900	Oryza meridionalis	OMERI08G12900	I	0.000
OMERI09G07770	Oryza meridionalis	OMERI09G07770	I	0.000
ONIVA03G32600	Oryza nivara	ONIVA03G32600	I	0.000
ONIVA09G09540	Oryza nivara	ONIVA09G09540	I	0.000
OPUNC03G28490	Oryza punctata	OPUNC03G28490	I	0.000
OPUNC08G13710	Oryza punctata	OPUNC08G13710	I	0.000
OPUNC09G08520	Oryza punctata	OPUNC09G08520	I	0.000
orange1.1g035911m.g	Citrus sinensis	orange1.1g035911m.g	I	0.000
ORGLA03G0289500	Oryza glaberrima	ORGLA03G0289500	I	0.000
ORUFI03G32570	Oryza rufipogon	ORUFI03G32570	I	0.000
ORUFI09G10660	Oryza rufipogon	ORUFI09G10660	I	0.000
OS09G0410500	Oryza sativa	OS09G0410500	I	0.000
Pavir.Ba01820	Panicum virgatum	Pavir.Ba01820	I	0.000
Pavir.Bb02154	Panicum virgatum	Pavir.Bb02154	I	0.000
Pavir.Fa00870	Panicum virgatum	Pavir.Fa00870	I	0.000
Pavir.Fb01590	Panicum virgatum	Pavir.Fb01590	I	0.000
Pavir.Ia00838	Panicum virgatum	Pavir.Ia00838	I	0.000
Pavir.Ib04362	Panicum virgatum	Pavir.Ib04362	I	0.000
PDK_20s1689851g001	Phoenix dactylifera	PDK_20s1689851g001	I	0.000
PK12240.1	Cannabis sativa	PK12240.1	D	0.000
Pm030202	Prunus mume	Pm030202	I	0.000
POPTR_0017s13980	Populus trichocarpa	POPTR_0017s13980	I	0.000
PRUPE_ppa015026mg	Prunus persica	PRUPE_ppa015026mg	I	0.000
SapurV1A.0682s0140	Salix purpurea	SapurV1A.0682s0140	I	0.000
Sb01g010690	Sorghum bicolor	Sb01g010690	I	0.000
Sb02g024450	Sorghum bicolor	Sb02g024450	I	0.000
Sb07g021140	Sorghum bicolor	Sb07g021140	I	0.000
Si015230m.g	Setaria italica	Si015230m.g	I	0.000
Si033183m.g	Setaria italica	Si033183m.g	I	0.000
Si038692m.g	Setaria italica	Si038692m.g	I	0.000
TB1	Oryza sativa	OS03G0706500	D	0.000
TCM_012252	Theobroma cacao	TCM_012252	I	0.000
TCP1	Arabidopsis lyrata	fgenesh1_pg.C_scaffold_2001059	I	0.000
Thhalv10019499m.g	Eutrema salsugineum	Thhalv10019499m.g	I	0.000
Traes_4AL_75D069945	Triticum aestivum	Traes_4AL_75D069945	I	0.000
Traes_4BS_DC076554D	Triticum aestivum	Traes_4BS_DC076554D	I	0.000
Traes_4DS_59A46B69A	Triticum aestivum	Traes_4DS_59A46B69A	I	0.000
Traes_5BL_19F383CC71	Triticum aestivum	Traes_5BL_19F383CC71	I	0.000
Traes_5DL_46A3B0DAB1	Triticum aestivum	Traes_5DL_46A3B0DAB1	I	0.000
TRIUR3_20728	Triticum urartu	TRIUR3_20728	I	0.000

Ciclev10021073m.g (Citrus clementina) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1648 Related TFs

Ciclev10021073m.g **(Citrus clementina)
AP2**