CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gorai.001G176700 *(Gossypium raimondii)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Gorai.001G176700	T008475_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF098 M01618_2.00	Arabidopsis thaliana	NNGCCGNC	GNCGGCNN	PBM Weirauch et al.(2014) pTH8259	0.735	0.837
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.733	0.776
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.733	0.776
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.733	0.776
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.733	0.776
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.733	0.776
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.732	0.714
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.728	0.776
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.728	0.776
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.728	0.776
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.718	0.755
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.716	0.714
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.716	0.714
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.714	0.735
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.714	0.735
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.714	0.735
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.712	0.714
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.712	0.714
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.712	0.714
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.712	0.694
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.712	0.694
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.708	0.735
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.706	0.714
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.705	0.714
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.705	0.714
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.705	0.714
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.704	0.755
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.703	0.796
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.703	0.796
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.702	0.735
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.701	0.633
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.700	0.735
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.700	0.735
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.698	0.735
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.698	0.735
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.697	0.673
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.697	0.653
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.697	0.653
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.697	0.755
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.697	0.755
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.695	0.735
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.695	0.735
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.695	0.735
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.693	0.694
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.693	0.694
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.692	0.735
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.690	0.694
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.689	0.673
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.689	0.673
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.686	0.776
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.686	0.776
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.686	0.776
ERF13 M01615_2.00	Arabidopsis thaliana	VGCCGSCD	HGSCGGCB	PBM Weirauch et al.(2014) pTH7283	0.683	0.735
ERF13 M06612_2.00	Arabidopsis thaliana	NHDBMGCCGCCDYHD	HDRHGGCGGCKVHDN	Dap-seq OMalley et al.(2016) ERF13_colamp_a	0.683	0.735
ERF13 M06613_2.00	Arabidopsis thaliana	HDBMGCCGCCDYHDN	NHDRHGGCGGCKVHD	Dap-seq OMalley et al.(2016) ERF13_col_b	0.683	0.735
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.683	0.755
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.683	0.755
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.683	0.755
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.683	0.735
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.683	0.735
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.683	0.735
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.681	0.673
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.681	0.673
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.681	0.673
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.679	0.592
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.678	0.694
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gorai.001G176700.1	AP2	17	69	VRYRGIRRRPWGKFAAEIRDPTRNGARLWLGTFETAEEAARAYDRAAFAFRGH

Links
Other AP2 family TFs
Other *Gossypium raimondii* TFs

1601 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACOC_0000909601	Angiostrongylus costaricensis	ACOC_0000909601	N
ALUE_0000006201	Ascaris lumbricoides	ALUE_0000006201	N
ANCCEY_02227	Ancylostoma ceylanicum	ANCCEY_02227	N
ASIM_0001061401	Anisakis simplex	ASIM_0001061401	N
ASU_13814	Ascaris suum	ASU_13814	N
Bm4196	Brugia malayi	Bm4196	N
BTMF_0001047601	Brugia timori	BTMF_0001047601	N
BTMF_0001685601	Brugia timori	BTMF_0001685601	N
CBG14076	Caenorhabditis briggsae	CBG14076	N
CBN28426	Caenorhabditis brenneri	CBN28426	N
CJA16887	Caenorhabditis japonica	CJA16887	N
CRE00936	Caenorhabditis remanei	CRE00936	N
DICVIV_06612	Dictyocaulus viviparus	DICVIV_06612	N
EVEC_0001355301	Enterobius vermicularis	EVEC_0001355301	N
GPLIN_001118300	Globodera pallida	GPLIN_001118300	N
HCOI00419700	Haemonchus contortus	HCOI00419700	N
HPLM_0000886801	Haemonchus placei	HPLM_0000886801	N
L596_g148	Steinernema carpocapsae	L596_g148	N
L889_g31190	Steinernema feltiae	L889_g31190	N
L892_g12859	Steinernema scapterisci	L892_g12859	N
L893_g14515	Steinernema glaseri	L893_g14515	N
L898_g33187	Steinernema monticolum	L898_g33187	N
LOAG_16508	Loa loa	LOAG_16508	N
maker-nMf.1.1.scaf01187-augustus-gene-0.14	Meloidogyne floridensis	maker-nMf.1.1.scaf01187-augustus-gene-0.14	N
nAv.1.0.1.g08576	Acanthocheilonema viteae	nAv.1.0.1.g08576	N
NBR_0000487701	Nippostrongylus brasiliensis	NBR_0000487701	N
nDi.2.2.2.g00913	Dirofilaria immitis	nDi.2.2.2.g00913	N
NECAME_03708	Necator americanus	NECAME_03708	N
nLs.2.1.2.g06387	Litomosoides sigmodontis	nLs.2.1.2.g06387	N
nOo.2.0.1.g07401	Onchocerca ochengi	nOo.2.0.1.g07401	N
npax-2	Caenorhabditis elegans	WBGene00018591	N
OFLC_0000734201	Onchocerca flexuosa	OFLC_0000734201	N
PEQ_0001215301	Parascaris equorum	PEQ_0001215301	N
Ppa-npax-4	Pristionchus pacificus	PPA03062	N
PTRK_0001095200	Parastrongyloides trichosuri	PTRK_0001095200	N
RSKR_0000509700	Rhabditophanes kr3021	RSKR_0000509700	N
scaffold1066-EXSNAP2012.3	Pristionchus exspectatus	scaffold1066-EXSNAP2012.3	N
SMUV_0000429701	Syphacia muris	SMUV_0000429701	N
SPAL_0000243500	Strongyloides papillosus	SPAL_0000243500	N
SSTP_0000993700	Strongyloides stercoralis	SSTP_0000993700	N
SVE_0001100	Strongyloides venezuelensis	SVE_0001100	N
TCLT_0000997101	Thelazia callipaeda	TCLT_0000997101	N
TCNE_0000252101	Toxocara canis	TCNE_0000252101	N
WBGene00239907	Onchocerca volvulus	WBGene00239907	N
WUBG_05014	Wuchereria bancrofti	WUBG_05014	N

Gorai.001G176700 (Gossypium raimondii) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1601 Related TFs

Gorai.001G176700 **(Gossypium raimondii)
AP2**