Arid5a (Mus musculus)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSMUSG00000037447 T014644_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5a
M00116_2.00		 Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.785 1.000
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.649 0.647
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.632 0.753
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.632 0.753
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.632 0.753
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.632 0.753
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.493 0.588
For this family, TFs with SR scores > 0.422 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00116_2.00 ARID/BRIGHT 21 106

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000095385 ARID/BRIGHT 81 166
ENSMUSP00000110683 ARID/BRIGHT 51 89
ENSMUSP00000110683 ARID/BRIGHT 164 231
ENSMUSP00000110684 ARID/BRIGHT 52 137
ENSMUSP00000115490 ARID/BRIGHT 51 136

Links

Other ARID/BRIGHT family TFs
Other Mus musculus TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007290 Ailuropoda melanoleuca ENSAMEG00000007290 N 0.000
ENSBTAP00000001994-D1 Bos grunniens ENSBTAP00000001994-D1 N 0.000
ENSCSAG00000012442 Chlorocebus sabaeus ENSCSAG00000012442 N 0.000
ENSMPUG00000008759 Mustela putorius furo ENSMPUG00000008759 N 0.000
ENSNLEG00000003582 Nomascus leucogenys ENSNLEG00000003582 N 0.000
ENSOARG00000005313 Ovis aries ENSOARG00000005313 N 0.000
ENSP00000287025 Macaca fascicularis ENSP00000287025 N 0.000
ENSPANG00000000418 Papio anubis ENSPANG00000000418 N 0.000
ENSPPYG00000018764 Pongo abelii ENSPPYG00000018764 N 0.000
ENSSHAG00000005026 Sarcophilus harrisii ENSSHAG00000005026 N 0.000
ENSSTOG00000008021 Ictidomys tridecemlineatus ENSSTOG00000008021 N 0.000
MTERF3 Tursiops truncatus ENSTTRG00000007349 N 0.000
MTERF3 Tupaia belangeri ENSTBEG00000002615 N 0.000
MTERF3 Sus scrofa ENSSSCG00000006090 N 0.000
Mterf3 Rattus norvegicus ENSRNOG00000004492 N 0.000
MTERF3 Pan troglodytes ENSPTRG00000020441 N 0.000
MTERF3 Procavia capensis ENSPCAG00000009302 N 0.000
MTERF3 Otolemur garnettii ENSOGAG00000004303 N 0.000
MTERF3 Vicugna pacos ENSVPAG00000004132 N 0.000
MTERF3 Oryctolagus cuniculus ENSOCUG00000004276 N 0.000
MTERF3 Bos taurus ENSBTAG00000001522 N 0.000
Mterf3 Mus musculus ENSMUSG00000021519 N 0.000
MTERF3 Monodelphis domestica ENSMODG00000006966 N 0.000
MTERF3 Macaca mulatta ENSMMUG00000008808 N 0.000
MTERF3 Myotis lucifugus ENSMLUG00000007186 N 0.000
MTERF3 Loxodonta africana ENSLAFG00000002544 N 0.000
MTERF3 Gorilla gorilla ENSGGOG00000011535 N 0.000
MTERF3 Homo sapiens ENSG00000156469 N 0.000
MTERF3 Felis catus ENSFCAG00000028511 N 0.000
MTERF3 Equus caballus ENSECAG00000012943 N 0.000
Mterf3 Dipodomys ordii ENSDORG00000010477 N 0.000
MTERF3 Dasypus novemcinctus ENSDNOG00000041739 N 0.000
MTERF3 Cavia porcellus ENSCPOG00000003487 N 0.000
MTERF3 Callithrix jacchus ENSCJAG00000020561 N 0.000
MTERF3 Choloepus hoffmanni ENSCHOG00000007893 N 0.000
MTERF3 Canis familiaris ENSCAFG00000009460 N 0.000
Myotis_brandtii_MTERFD1_10032119 Myotis brandtii Myotis_brandtii_MTERFD1_10032119 N 0.000