VIT_18s0122g00560 (Vitis vinifera)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 VIT_18s0122g00560 T015794_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.667 0.753
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.659 0.718
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_18s0122g00560.t01 ARID/BRIGHT 155 240

Links

Other ARID/BRIGHT family TFs
Other Vitis vinifera TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BN946_scf184858.g55 Trametes cinnabarina BN946_scf184858.g55 I 0.000
CC1G_00311 Coprinopsis cinerea CC1G_00311 I 0.000
CERSUDRAFT_149026 Ceriporiopsis subvermispora CERSUDRAFT_149026 I 0.000
CGI_10016120 Crassostrea gigas CGI_10016120 I 0.000
CGI_10018775 Crassostrea gigas CGI_10018775 I 0.000
DICSQDRAFT_106385 Dichomitus squalens DICSQDRAFT_106385 I 0.000
ENSSSCG00000000168 Sus scrofa ENSSSCG00000000168 I 0.000
fgeneshTM_pg.2_#_559 Tremella mesenterica fgeneshTM_pg.2_#_559 I 0.000
HelroG184328 Helobdella robusta HelroG184328 I 0.000
MVLG_04348 Microbotryum violaceum MVLG_04348 I 0.000
nRc.2.0.1.g09916 Romanomermis culicivorax nRc.2.0.1.g09916 I 0.000
PaG_06171 Pseudozyma aphidis PaG_06171 N 0.000
PAN0_021d6025 Pseudozyma antarctica PAN0_021d6025 N 0.000
PFL1_03040 Pseudozyma flocculosa PFL1_03040 N 0.000
PHSY_002871 Pseudozyma hubeiensis PHSY_002871 N 0.000
PHUM236330 Pediculus humanus PHUM236330 I 0.000
PSEUBRA_SCAF22g00073 Pseudozyma brasiliensis PSEUBRA_SCAF22g00073 N 0.000
PTSG_12063 Salpingoeca rosetta PTSG_12063 I 0.000
Rfx4 Rattus norvegicus ENSRNOG00000051536 I 0.000
tetur19g03130 Tetranychus urticae tetur19g03130 I 0.000
TriadG51992 Trichoplax adhaerens TriadG51992 I 0.000
UHOR_03310 Ustilago hordei UHOR_03310 N 0.000
UM06308 Ustilago maydis UM06308 N 0.000