Pm020703 (Prunus mume)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Pm020703 T015930_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.667 0.741
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.615 0.765
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm020703 ARID/BRIGHT 633 718

Links

Other ARID/BRIGHT family TFs
Other Prunus mume TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29797.m000353 Ricinus communis 29797.m000353 N 0.000
29830.m001415 Ricinus communis 29830.m001415 N 0.000
anac036 Arabidopsis lyrata fgenesh2_kg.3__3291__AT2G17040.1 N 0.000
anac036 Arabidopsis thaliana AT2G17040 N 0.000
Aquca_015_00469 Aquilegia coerulea Aquca_015_00469 N 0.000
Bo3g092020 Brassica oleracea Bo3g092020 N 0.000
Bo7g015050 Brassica oleracea Bo7g015050 N 0.000
Bostr.18351s0165 Boechera stricta Bostr.18351s0165 N 0.000
Bra002018 Brassica rapa Bra002018 N 0.000
Bra013034 Brassica rapa Bra013034 N 0.000
Cagra.0805s0005 Capsella grandiflora Cagra.0805s0005 N 0.000
Carubv10014350m.g Capsella rubella Carubv10014350m.g N 0.000
cassava13355.valid.m1 Manihot esculenta cassava13355.valid.m1 N 0.000
cassava23439.valid.m1 Manihot esculenta cassava23439.valid.m1 I 0.000
cassava30341.valid.m1 Manihot esculenta cassava30341.valid.m1 N 0.000
Ca_11128 Cicer arietinum Ca_11128 N 0.000
chr3.CM0460.350.nd Lotus japonicus chr3.CM0460.350.nd N 0.000
Ciclev10029007m.g Citrus clementina Ciclev10029007m.g N 0.000
Cla007018 Citrullus lanatus Cla007018 N 0.000
Eucgr.I01494 Eucalyptus grandis Eucgr.I01494 N 0.000
evm.TU.supercontig_320.2 Carica papaya evm.TU.supercontig_320.2 N 0.000
gene17203-v1.0-hybrid Fragaria vesca gene17203-v1.0-hybrid N 0.000
GLYMA11G10230 Glycine max GLYMA11G10230 N 0.000
GLYMA12G02540 Glycine max GLYMA12G02540 N 0.000
Gorai.002G001900 Gossypium raimondii Gorai.002G001900 N 0.000
Gorai.003G003900 Gossypium raimondii Gorai.003G003900 N 0.000
Gorai.005G257800 Gossypium raimondii Gorai.005G257800 N 0.000
Gorai.008G038800 Gossypium raimondii Gorai.008G038800 N 0.000
MDP0000480581 Malus domestica MDP0000480581 N 0.000
MDP0000868556 Malus domestica MDP0000868556 N 0.000
MTR_4g075980 Medicago truncatula MTR_4g075980 N 0.000
orange1.1g023427m.g Citrus sinensis orange1.1g023427m.g N 0.000
Pm020961 Prunus mume Pm020961 N 0.000
POPTR_0004s18860 Populus trichocarpa POPTR_0004s18860 N 0.000
POPTR_0009s14370 Populus trichocarpa POPTR_0009s14370 N 0.000
PRUPE_ppa009455mg Prunus persica PRUPE_ppa009455mg N 0.000
SapurV1A.0080s0480 Salix purpurea SapurV1A.0080s0480 N 0.000
SapurV1A.0218s0020 Salix purpurea SapurV1A.0218s0020 N 0.000
TCM_006499 Theobroma cacao TCM_006499 N 0.000
Thhalv10022800m.g Eutrema salsugineum Thhalv10022800m.g N 0.000
VIT_04s0008g00150 Vitis vinifera VIT_04s0008g00150 N 0.000