30162.m001290 (Ricinus communis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 30162.m001290 T015945_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.667 0.744
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.615 0.756
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30162.m001290 ARID/BRIGHT 217 302

Links

Other ARID/BRIGHT family TFs
Other Ricinus communis TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_18459 Ancylostoma caninum ANCCAN_18459 I 0.000
ASIM_0001589901 Anisakis simplex ASIM_0001589901 I 0.000
ASU_10946 Ascaris suum ASU_10946 I 0.000
Bm14724 Brugia malayi Bm14724 I 0.000
BTMF_0000273701 Brugia timori BTMF_0000273701 I 0.000
BXY_0011200 Bursaphelenchus xylophilus BXY_0011200 I 0.000
CBG07552 Caenorhabditis briggsae CBG07552 I 0.000
CBN19233 Caenorhabditis brenneri CBN19233 I 0.000
CJA13646 Caenorhabditis japonica CJA13646 I 0.000
CRE15289 Caenorhabditis remanei CRE15289 I 0.000
DICVIV_11945 Dictyocaulus viviparus DICVIV_11945 I 0.000
GPLIN_000669000 Globodera pallida GPLIN_000669000 I 0.000
HCOI02077900 Haemonchus contortus HCOI02077900 I 0.000
L596_g25666 Steinernema carpocapsae L596_g25666 I 0.000
L892_g650 Steinernema scapterisci L892_g650 I 0.000
L893_g29555 Steinernema glaseri L893_g29555 I 0.000
LOAG_18352 Loa loa LOAG_18352 I 0.000
maker-nMf.1.1.scaf07948-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf07948-snap-gene-0.4 I 0.000
MhA1_Contig217.frz3.gene7 Meloidogyne hapla MhA1_Contig217.frz3.gene7 I 0.000
Minc01725 Meloidogyne incognita Minc01725 I 0.000
Minc13525 Meloidogyne incognita Minc13525 I 0.000
nAv.1.0.1.g09896 Acanthocheilonema viteae nAv.1.0.1.g09896 I 0.000
nDi.2.2.2.g05078 Dirofilaria immitis nDi.2.2.2.g05078 I 0.000
NECAME_04545 Necator americanus NECAME_04545 I 0.000
nhr-3 Caenorhabditis elegans WBGene00003602 D 0.000
nLs.2.1.2.g05858 Litomosoides sigmodontis nLs.2.1.2.g05858 I 0.000
nOo.2.0.1.g05901 Onchocerca ochengi nOo.2.0.1.g05901 I 0.000
OESDEN_02943 Oesophagostomum dentatum OESDEN_02943 I 0.000
OFLC_0000776201 Onchocerca flexuosa OFLC_0000776201 I 0.000
PPA20304 Pristionchus pacificus PPA20304 I 0.000
SMUV_0000428701 Syphacia muris SMUV_0000428701 I 0.000
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 I 0.000
SVUK_0001012101 Strongylus vulgaris SVUK_0001012101 I 0.000
TCLT_0000079701 Thelazia callipaeda TCLT_0000079701 I 0.000
TCNE_0001780601 Toxocara canis TCNE_0001780601 I 0.000
TELCIR_01879 Teladorsagia circumcincta TELCIR_01879 I 0.000
WBGene00241910 Onchocerca volvulus WBGene00241910 I 0.000
WUBG_08518 Wuchereria bancrofti WUBG_08518 I 0.000