Bo5g116790 (Brassica oleracea)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bo5g116790 T018689_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.947 0.947
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.947 0.947
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g116790.1 B3 5 100
Bo5g116790.1 B3 250 344

Links

Other B3 family TFs
Other Brassica oleracea TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_13671 Cicer arietinum Ca_13671 N
Ca_14825 Cicer arietinum Ca_14825 N
chr2.CM0262.200.nc Lotus japonicus chr2.CM0262.200.nc I
chr2.CM0308.470.nd Lotus japonicus chr2.CM0308.470.nd I
chr3.LjT23H01.130.nc Lotus japonicus chr3.LjT23H01.130.nc N
GLYMA07G21160 Glycine max GLYMA07G21160 I
GLYMA11G13210 Glycine max GLYMA11G13210 N
GLYMA12G05250 Glycine max GLYMA12G05250 N
GLYMA20G01130 Glycine max GLYMA20G01130 N
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.767
MTR_1g034210 Medicago truncatula MTR_1g034210 N
MTR_4g068320 Medicago truncatula MTR_4g068320 N
PK10791.1 Cannabis sativa PK10791.1 I 0.720
PRUPE_ppa006275mg Prunus persica PRUPE_ppa006275mg I
TCM_006971 Theobroma cacao TCM_006971 I 0.804