POPTR_0009s11170 (Populus trichocarpa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 POPTR_0009s11170 T020881_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.730 0.730
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.730 0.730
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s11170.1 B3 5 98
POPTR_0009s11170.1 B3 277 371
POPTR_0009s11170.2 B3 5 98

Links

Other B3 family TFs
Other Populus trichocarpa TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_090460 Albugo laibachii ALNC14_090460 N
e_gw1.14.373.1 Phytophthora capsici e_gw1.14.373.1 N
F443_05686 Phytophthora parasitica F443_05686 N
fgenesh_scip_prom.28083.4934 Phytophthora lateralis fgenesh_scip_prom.28083.4934 N
HpaG808391 Hyaloperonospora arabidopsidis HpaG808391 N
HpaG810880 Hyaloperonospora arabidopsidis HpaG810880 N
maker-par_contig_875-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_875-fgenesh-gene-0.0 N
maker-pve_contig_661-fgenesh-gene-0.6 Pythium vexans maker-pve_contig_661-fgenesh-gene-0.6 N
Phyra82440 Phytophthora ramorum Phyra82440 N
Physo127243 Phytophthora sojae Physo127243 N
PITG_01080 Phytophthora infestans PITG_01080 N
PYU1_G001783 Pythium ultimum PYU1_G001783 N
SPRG_07346 Saprolegnia parasitica SPRG_07346 N