orange1.1g005485m.g (Citrus sinensis)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 orange1.1g005485m.g T028421_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g005477m BED ZF 40 96
orange1.1g005483m BED ZF 40 96
orange1.1g005485m BED ZF 40 96

Links

Other BED ZF family TFs
Other Citrus sinensis TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g107870 Brassica oleracea Bo4g107870 N 0.727
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.750
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.705
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.773
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.773
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.864
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.795
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N 1.000
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.705
Cucsa.096030 Cucumis sativus Cucsa.096030 N 0.773
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.773
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.864
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.864
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.727
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.727
GLYMA07G03280 Glycine max GLYMA07G03280 N 0.841
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.773
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.773
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.773
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.795
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.705
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.705
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.909
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.705
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.705
MDP0000197332 Malus domestica MDP0000197332 N 0.705
MDP0000394762 Malus domestica MDP0000394762 N 0.750
mgf025287m Mimulus guttatus mgf025287m N 0.795
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.705
OB08G27850 Oryza brachyantha OB08G27850 N 0.705
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.795
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.705
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.705
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N 0.727
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.705
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.705
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.705
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.818
PK27100.1 Cannabis sativa PK27100.1 N 0.795
PK28412.1 Cannabis sativa PK28412.1 N 0.705
Pm013703 Prunus mume Pm013703 N 0.818
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.864
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.864
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.750
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.818
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N 0.818
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.750
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.864
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.864
Si000431m.g Setaria italica Si000431m.g N 0.705
Si000761m.g Setaria italica Si000761m.g N 0.727
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.818
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.705
TCM_027266 Theobroma cacao TCM_027266 N 0.909
TCM_038144 Theobroma cacao TCM_038144 N 0.795
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.705
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.705
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.705
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.909
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.773