Pavir.Gb00429 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Gb00429 T028502_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb00429.1.p BED ZF 49 95
Pavir.Gb00429.1.p BED ZF 148 194
Pavir.Gb00429.2.p BED ZF 49 95
Pavir.Gb00429.2.p BED ZF 148 194
Pavir.Gb00429.3.p BED ZF 49 95
Pavir.Gb00429.3.p BED ZF 148 194

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28859.m000324 Ricinus communis 28859.m000324 N
29758.m000681 Ricinus communis 29758.m000681 N
Bo2g152930 Brassica oleracea Bo2g152930 N
Bostr.29827s0002 Boechera stricta Bostr.29827s0002 N
Bra020611 Brassica rapa Bra020611 N
Cagra.13833s0001 Capsella grandiflora Cagra.13833s0001 N
Carubv10000250m.g Capsella rubella Carubv10000250m.g N
cassava40276.m1 Manihot esculenta cassava40276.m1 N
cassava40936.m1 Manihot esculenta cassava40936.m1 N
Ca_07896 Cicer arietinum Ca_07896 N
Ciclev10014474m.g Citrus clementina Ciclev10014474m.g N
Ciclev10014481m.g Citrus clementina Ciclev10014481m.g N
Cucsa.044640 Cucumis sativus Cucsa.044640 N
Eucgr.D01451 Eucalyptus grandis Eucgr.D01451 N
Eucgr.H00883 Eucalyptus grandis Eucgr.H00883 N
FRS10 Vitis vinifera VIT_12s0057g00960 N
FRS10 Arabidopsis thaliana AT5G28530 N
FRS10 Populus trichocarpa POPTR_0014s16500 N
gene15606-v1.0-hybrid Fragaria vesca gene15606-v1.0-hybrid N
gene19817-v1.0-hybrid Fragaria vesca gene19817-v1.0-hybrid N
GLYMA09G01540 Glycine max GLYMA09G01540 N
Gorai.005G129200 Gossypium raimondii Gorai.005G129200 N
Gorai.010G189600 Gossypium raimondii Gorai.010G189600 N
MDP0000249284 Malus domestica MDP0000249284 N
orange1.1g005549m.g Citrus sinensis orange1.1g005549m.g N
orange1.1g005579m.g Citrus sinensis orange1.1g005579m.g N
PK07950.1 Cannabis sativa PK07950.1 N
PK09224.1 Cannabis sativa PK09224.1 N
Pm015052 Prunus mume Pm015052 N
POPTR_0016s00900 Populus trichocarpa POPTR_0016s00900 N
PRUPE_ppa002276mg Prunus persica PRUPE_ppa002276mg N
PRUPE_ppa002284mg Prunus persica PRUPE_ppa002284mg N
SapurV1A.0054s0360 Salix purpurea SapurV1A.0054s0360 N
SapurV1A.0089s0660 Salix purpurea SapurV1A.0089s0660 N
Solyc07g045520.2 Solanum lycopersicum Solyc07g045520.2 N
TCM_020251 Theobroma cacao TCM_020251 N
TCM_030416 Theobroma cacao TCM_030416 N
Thhalv10003748m.g Eutrema salsugineum Thhalv10003748m.g N
VIT_00s0194g00200 Vitis vinifera VIT_00s0194g00200 N