Pavir.J16563 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.J16563 T028584_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J16563.1.p BED ZF 30 80
Pavir.J16563.1.p BED ZF 130 174

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003278 Calypte anna Aan_R003278 N
Afo_R003266 Aptenodytes forsteri Afo_R003266 N
Alligator_sinensis_CCG001703.1 Alligator sinensis Alligator_sinensis_CCG001703.1 I
Cmyd_10017446 Chelonia mydas Cmyd_10017446 I
ENSAPLG00000014633 Anas platyrhynchos ENSAPLG00000014633 N
ENSFALG00000012974 Ficedula albicollis ENSFALG00000012974 N
ENSLACG00000017707 Latimeria chalumnae ENSLACG00000017707 I
ENSPSIG00000003607 Pelodiscus sinensis ENSPSIG00000003607 I
Gfo_R009598 Geospiza fortis Gfo_R009598 N
Ogr08528 Ophisaurus gracilis Ogr08528 N
Pvit_03333 Pogona vitticeps Pvit_03333 N
SNAI1 Ornithorhynchus anatinus ENSOANG00000008681 N
SNAI1 Taeniopygia guttata ENSTGUG00000008724 N
SNAI1 Gallus gallus ENSGALG00000008018 N
SNAI1 Anolis carolinensis ENSACAG00000015607 N
snai1 Xenopus tropicalis XB-GENE-479970 I
snai1.S Xenopus laevis XB-GENE-865328 I