Bra016886 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra016886 T031444_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.914 0.941
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.914 0.941
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.867 0.961
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016886.1-P bHLH 275 325

Links

Other bHLH family TFs
Other Brassica rapa TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29216.m000261 Ricinus communis 29216.m000261 I 0.879
30152.m002405 Ricinus communis 30152.m002405 I 0.877
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.879
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.851
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.867
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.867
BHLH122 Arabidopsis thaliana AT1G51140 D 0.914
Bo4g015860 Brassica oleracea Bo4g015860 I 0.856
Bo4g191390 Brassica oleracea Bo4g191390 I 0.914
Bo6g024810 Brassica oleracea Bo6g024810 I 0.914
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.914
Bra004678 Brassica rapa Bra004678 I 0.856
Bra018896 Brassica rapa Bra018896 I 0.914
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.867
BRADI4G33670 Brachypodium distachyon BRADI4G33670 I 0.844
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.914
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.914
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.879
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.877
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.879
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.879
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.879
Ca_02662 Cicer arietinum Ca_02662 I 0.914
Ca_14223 Cicer arietinum Ca_14223 I 0.914
Ca_18899 Cicer arietinum Ca_18899 I 0.856
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.879
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.914
Ciclev10031622m.g Citrus clementina Ciclev10031622m.g I 0.850
Cla006394 Citrullus lanatus Cla006394 I 0.856
Cla017792 Citrullus lanatus Cla017792 I 0.879
Cucsa.143260 Cucumis sativus Cucsa.143260 I 0.856
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.879
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.879
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.914
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.902
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.879
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.866
e_gw1.273.42.1 Physcomitrella patens e_gw1.273.42.1 I 0.839
F775_24151 Aegilops tauschii F775_24151 I 0.867
fgenesh1_pg.scaffold_155000050 Physcomitrella patens fgenesh1_pg.scaffold_155000050 I 0.869
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.914
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.879
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.879
gene26967-v1.0-hybrid Fragaria vesca gene26967-v1.0-hybrid I 0.850
GLYMA02G29830 Glycine max GLYMA02G29830 I 0.849
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.879
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.914
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.914
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.914
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.914
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.879
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I 0.855
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.879
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.914
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.902
GRMZM2G142932 Zea mays GRMZM2G142932 I 0.844
GRMZM2G153454 Zea mays GRMZM2G153454 I 0.844
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.902
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.851
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.902
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.879
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.840
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.868
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.914
gw1.185.89.1 Physcomitrella patens gw1.185.89.1 I 0.845
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.851
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.879
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.879
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.879
MDP0000180376 Malus domestica MDP0000180376 I 0.879
mgf016092m Mimulus guttatus mgf016092m I 0.856
mgf016734m Mimulus guttatus mgf016734m I 0.879
MLOC_30102 Hordeum vulgare MLOC_30102 I 0.844
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.867
MTR_1g052470 Medicago truncatula MTR_1g052470 I 0.856
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.914
MTR_4g065870 Medicago truncatula MTR_4g065870 I 0.856
OB02G30670 Oryza brachyantha OB02G30670 I 0.851
OB08G26810 Oryza brachyantha OB08G26810 I 0.867
OBART02G23210 Oryza barthii OBART02G23210 I 0.851
OBART08G19860 Oryza barthii OBART08G19860 I 0.867
OBART09G14660 Oryza barthii OBART09G14660 I 0.867
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.867
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.867
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.851
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.867
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.851
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.867
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.867
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.851
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.867
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.867
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.851
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.867
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.867
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.914
orange1.1g016638m.g Citrus sinensis orange1.1g016638m.g I 0.850
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.879
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.851
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.867
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.867
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.851
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.867
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.867
OS08G0506700 Oryza sativa OS08G0506700 D 0.867
OS09G0487900 Oryza sativa OS09G0487900 I 0.867
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I 0.840
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.851
Pavir.Ba00676 Panicum virgatum Pavir.Ba00676 I 0.844
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.902
Pavir.Bb03157 Panicum virgatum Pavir.Bb03157 I 0.844
Pavir.Fa00493 Panicum virgatum Pavir.Fa00493 I 0.844
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.851
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.851
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.902
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.851
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.902
Pavir.J25484 Panicum virgatum Pavir.J25484 I 0.844
PDK_20s1302565g001 Phoenix dactylifera PDK_20s1302565g001 I 0.893
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.879
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.864
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.864
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.879
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.877
PK18038.1 Cannabis sativa PK18038.1 I 0.879
PK20089.1 Cannabis sativa PK20089.1 I 0.914
Pm000447 Prunus mume Pm000447 I 0.879
Pm025821 Prunus mume Pm025821 I 0.879
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.879
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.877
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.879
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.879
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.879
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.879
SapurV1A.0027s0090 Salix purpurea SapurV1A.0027s0090 I 0.847
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.864
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.879
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.864
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.902
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.851
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.851
Sb07g027810 Sorghum bicolor Sb07g027810 I 0.844
SELMODRAFT_402301 Selaginella moellendorffii SELMODRAFT_402301 I 0.843
Si010513m.g Setaria italica Si010513m.g I 0.851
Si013950m.g Setaria italica Si013950m.g I 0.844
Si029614m.g Setaria italica Si029614m.g I 0.902
Si030166m.g Setaria italica Si030166m.g I 0.844
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.877
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.879
TCM_005925 Theobroma cacao TCM_005925 I 0.855
TCM_024842 Theobroma cacao TCM_024842 I 0.879
TCM_040564 Theobroma cacao TCM_040564 I 0.914
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.914
Traes_5BL_4317E525B Triticum aestivum Traes_5BL_4317E525B I 0.844
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.867
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.867
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.867
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.879
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.877