CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSCSAG00000004521
(
Chlorocebus sabaeus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSCSAG00000004521
T033502_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
USF2
M04076_2.00
Homo sapiens
NVCACGTGVCN
NGBCACGTGBN
SELEX
Yin et al.(2017)
USF2_eDBD_HT-SELEX
0.914
1.000
USF2
M08050_2.00
Homo sapiens
NNVYCACGTGACHNNN
NNNDGTCACGTGRBNN
ChIP-seq
Mathelier et al.(2014)
MA0526.2
0.914
1.000
USF2
M07785_2.00
Homo sapiens
NGTCACGTGRBSVVV
BBBSVYCACGTGACN
ChIP-seq
Gerstein et al.(2012)
GM12878_USF2_Stanford
0.914
1.000
USF2
M07786_2.00
Homo sapiens
NVGTCACGTGRBSVVV
BBBSVYCACGTGACBN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF2_Stanford
0.914
1.000
USF2
M07787_2.00
Homo sapiens
RGTCACGTGVB
VBCACGTGACY
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_USF2_Stanford
0.914
1.000
USF2
M07788_2.00
Homo sapiens
NGTCACGTGRBSV
BSVYCACGTGACN
ChIP-seq
Gerstein et al.(2012)
HepG2_USF2_Stanford
0.914
1.000
USF2
M07789_2.00
Homo sapiens
RGTCACGTGRBSV
BSVYCACGTGACY
ChIP-seq
Gerstein et al.(2012)
K562_USF2_Stanford
0.914
1.000
USF2
M08715_2.00
Homo sapiens
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN
Misc
Kulakovskiy et al.(2013)
USF2_HUMAN.H11MO.0.A
0.914
1.000
USF2
M09812_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_01
0.914
1.000
USF2
M09813_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_02
0.914
1.000
USF2
M09814_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_Q6_01
0.914
1.000
USF2
M09815_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_Q6
0.914
1.000
USF2
M04077_2.00
Homo sapiens
VNCAYGTGACN
NGTCACRTGNB
SELEX
Yin et al.(2017)
USF2_eDBD_Methyl-HT-SELEX
0.914
1.000
Usf2
M01752_2.00
Mus musculus
NNCACGTGAN
NTCACGTGNN
PBM
Weirauch et al.(2014)
pTH5265
0.871
0.981
Usf2
M08777_2.00
Mus musculus
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN
Misc
Kulakovskiy et al.(2013)
USF2_MOUSE.H11MO.0.A
0.871
0.981
Usf2
M09479_2.00
Mus musculus
NNCAYGTGVY
RBCACRTGNN
Misc
Heinz et al.(2010)
C2C12-Usf2_GSE36030
0.871
0.981
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCSAP00000000856
bHLH
231
286
RRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELR
Links
Other
bHLH
family TFs
Other
Chlorocebus sabaeus
TFs
58 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
estExt_fgenesh2_pg.C_10050001
Branchiostoma floridae
estExt_fgenesh2_pg.C_10050001
N
estExt_fgenesh2_pg.C_10050002
Branchiostoma floridae
estExt_fgenesh2_pg.C_10050002
N
estExt_fgenesh2_pg.C_10050003
Branchiostoma floridae
estExt_fgenesh2_pg.C_10050003
N
estExt_fgenesh2_pg.C_1010105
Branchiostoma floridae
estExt_fgenesh2_pg.C_1010105
N
estExt_fgenesh2_pg.C_1360008
Branchiostoma floridae
estExt_fgenesh2_pg.C_1360008
N
estExt_fgenesh2_pg.C_160025
Branchiostoma floridae
estExt_fgenesh2_pg.C_160025
N
estExt_fgenesh2_pg.C_2150032
Branchiostoma floridae
estExt_fgenesh2_pg.C_2150032
N
estExt_fgenesh2_pg.C_460129
Branchiostoma floridae
estExt_fgenesh2_pg.C_460129
N
estExt_fgenesh2_pg.C_520015
Branchiostoma floridae
estExt_fgenesh2_pg.C_520015
N
estExt_fgenesh2_pg.C_5580012
Branchiostoma floridae
estExt_fgenesh2_pg.C_5580012
N
estExt_fgenesh2_pg.C_5860001
Branchiostoma floridae
estExt_fgenesh2_pg.C_5860001
N
estExt_fgenesh2_pg.C_7160018
Branchiostoma floridae
estExt_fgenesh2_pg.C_7160018
N
estExt_fgenesh2_pg.C_7360007
Branchiostoma floridae
estExt_fgenesh2_pg.C_7360007
N
estExt_fgenesh2_pg.C_750143
Branchiostoma floridae
estExt_fgenesh2_pg.C_750143
N
estExt_fgenesh2_pg.C_960136
Branchiostoma floridae
estExt_fgenesh2_pg.C_960136
N
fgenesh2_pg.scaffold_1639000001
Branchiostoma floridae
fgenesh2_pg.scaffold_1639000001
N
fgenesh2_pg.scaffold_268000051
Branchiostoma floridae
fgenesh2_pg.scaffold_268000051
N
fgenesh2_pg.scaffold_308000052
Branchiostoma floridae
fgenesh2_pg.scaffold_308000052
N
fgenesh2_pg.scaffold_32000031
Branchiostoma floridae
fgenesh2_pg.scaffold_32000031
N
fgenesh2_pg.scaffold_32000086
Branchiostoma floridae
fgenesh2_pg.scaffold_32000086
N
fgenesh2_pg.scaffold_354000013
Branchiostoma floridae
fgenesh2_pg.scaffold_354000013
N
fgenesh2_pg.scaffold_354000015
Branchiostoma floridae
fgenesh2_pg.scaffold_354000015
N
fgenesh2_pg.scaffold_440000023
Branchiostoma floridae
fgenesh2_pg.scaffold_440000023
N
fgenesh2_pg.scaffold_55000119
Branchiostoma floridae
fgenesh2_pg.scaffold_55000119
N
fgenesh2_pg.scaffold_55000124
Branchiostoma floridae
fgenesh2_pg.scaffold_55000124
N
fgenesh2_pg.scaffold_58000023
Branchiostoma floridae
fgenesh2_pg.scaffold_58000023
N
fgenesh2_pg.scaffold_72000003
Branchiostoma floridae
fgenesh2_pg.scaffold_72000003
N