ENSLACG00000001157 (Latimeria chalumnae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSLACG00000001157 T034786_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.861 0.944
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.861 0.944
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.861 0.944
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.861 0.944
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.861 0.944
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.861 0.944
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.861 0.944
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.861 0.944
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.861 0.944
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.861 0.944
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.861 0.944
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.861 0.944
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.861 0.944
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.861 0.944
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.861 0.944
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.861 0.944
Usf2
M01752_2.00 		Mus musculus
NNCACGTGAN
NTCACGTGNN		 PBM
Weirauch et al.(2014)
pTH5265 		0.858 0.926
USF2
M04076_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF2_eDBD_HT-SELEX 		0.858 0.926
USF2
M08050_2.00 		Homo sapiens
NNVYCACGTGACHNNN
NNNDGTCACGTGRBNN		 ChIP-seq
Mathelier et al.(2014)
MA0526.2 		0.858 0.926
USF2
M07785_2.00 		Homo sapiens
NGTCACGTGRBSVVV
BBBSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF2_Stanford 		0.858 0.926
USF2
M07786_2.00 		Homo sapiens
NVGTCACGTGRBSVVV
BBBSVYCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF2_Stanford 		0.858 0.926
USF2
M07787_2.00 		Homo sapiens
RGTCACGTGVB
VBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_USF2_Stanford 		0.858 0.926
USF2
M07788_2.00 		Homo sapiens
NGTCACGTGRBSV
BSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF2_Stanford 		0.858 0.926
USF2
M07789_2.00 		Homo sapiens
RGTCACGTGRBSV
BSVYCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
K562_USF2_Stanford 		0.858 0.926
USF2
M08715_2.00 		Homo sapiens
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN		 Misc
Kulakovskiy et al.(2013)
USF2_HUMAN.H11MO.0.A 		0.858 0.926
Usf2
M08777_2.00 		Mus musculus
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN		 Misc
Kulakovskiy et al.(2013)
USF2_MOUSE.H11MO.0.A 		0.858 0.926
Usf2
M09479_2.00 		Mus musculus
NNCAYGTGVY
RBCACRTGNN		 Misc
Heinz et al.(2010)
C2C12-Usf2_GSE36030 		0.858 0.926
USF2
M09812_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_01 		0.858 0.926
USF2
M09813_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_02 		0.858 0.926
USF2
M09814_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6_01 		0.858 0.926
USF2
M09815_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6 		0.858 0.926
USF2
M04077_2.00 		Homo sapiens
VNCAYGTGACN
NGTCACRTGNB		 SELEX
Yin et al.(2017)
USF2_eDBD_Methyl-HT-SELEX 		0.858 0.926
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000001290 bHLH 183 238

Links

Other bHLH family TFs
Other Latimeria chalumnae TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG004656.1 Alligator sinensis Alligator_sinensis_CCG004656.1 I 0.858
Alligator_sinensis_CCG013447.1 Alligator sinensis Alligator_sinensis_CCG013447.1 I 0.861
ARHGAP30 Dasypus novemcinctus ENSDNOG00000005811 I 0.861
B39674 Xenopus laevis B39674 I 0.861
ENSAMEG00000000235 Ailuropoda melanoleuca ENSAMEG00000000235 I 0.858
ENSAMEG00000015606 Ailuropoda melanoleuca ENSAMEG00000015606 I 0.861
ENSAMXG00000010483 Astyanax mexicanus ENSAMXG00000010483 N 0.846
ENSAMXG00000012300 Astyanax mexicanus ENSAMXG00000012300 N 0.846
ENSCSAG00000002622 Chlorocebus sabaeus ENSCSAG00000002622 I 0.861
ENSCSAG00000004521 Chlorocebus sabaeus ENSCSAG00000004521 I 0.858
ENSLOCG00000000641 Lepisosteus oculatus ENSLOCG00000000641 I 0.846
ENSMEUG00000009683 Macropus eugenii ENSMEUG00000009683 I 0.861
ENSMMUP00000002682 Macaca fascicularis ENSMMUP00000002682 I 0.861
ENSMPUG00000007099 Mustela putorius furo ENSMPUG00000007099 I 0.858
ENSMPUG00000014181 Mustela putorius furo ENSMPUG00000014181 I 0.858
ENSNLEG00000011114 Nomascus leucogenys ENSNLEG00000011114 I 0.858
ENSNLEG00000013935 Nomascus leucogenys ENSNLEG00000013935 I 0.861
ENSOARG00000003162 Ovis aries ENSOARG00000003162 I 0.861
ENSOARG00000004745 Ovis aries ENSOARG00000004745 I 0.858
ENSOARG00000009376 Ovis aries ENSOARG00000009376 I 0.861
ENSOGAG00000006705 Otolemur garnettii ENSOGAG00000006705 I 0.861
ENSONIG00000013775 Oreochromis niloticus ENSONIG00000013775 N 0.863
ENSONIG00000016360 Oreochromis niloticus ENSONIG00000016360 I 0.876
ENSP00000222305-D1 Bos grunniens ENSP00000222305-D1 I 0.858
ENSP00000357000-D1 Bos grunniens ENSP00000357000-D1 I 0.861
ENSPANG00000011040 Papio anubis ENSPANG00000011040 I 0.858
ENSPANG00000016141 Papio anubis ENSPANG00000016141 I 0.861
ENSPMAG00000009581 Petromyzon marinus ENSPMAG00000009581 N 0.846
ENSPPYG00000000619 Pongo abelii ENSPPYG00000000619 I 0.861
ENSPPYG00000009855 Pongo abelii ENSPPYG00000009855 I 0.858
ENSPSIG00000008116 Pelodiscus sinensis ENSPSIG00000008116 I 0.861
ENSSHAG00000016124 Sarcophilus harrisii ENSSHAG00000016124 I 0.861
ENSSTOG00000012364 Ictidomys tridecemlineatus ENSSTOG00000012364 I 0.861
ENSSTOG00000022219 Ictidomys tridecemlineatus ENSSTOG00000022219 I 0.858
Ogr08237 Ophisaurus gracilis Ogr08237 I 0.861
PHUM287950 Pediculus humanus PHUM287950 I 0.841
Pvit_07548 Pogona vitticeps Pvit_07548 I 0.861
USF1 Pan troglodytes ENSPTRG00000001565 I 0.861
USF1 Tupaia belangeri ENSTBEG00000003164 I 0.861
USF1 Pteropus vampyrus ENSPVAG00000005489 I 0.861
usf1 Oryzias latipes ENSORLG00000015402 I 0.846
USF1 Ochotona princeps ENSOPRG00000003858 I 0.861
Usf1 Rattus norvegicus ENSRNOG00000004255 I 0.861
USF1 Sus scrofa ENSSSCG00000006371 I 0.861
usf1 Tetraodon nigroviridis ENSTNIG00000014361 I 0.846
USF1 Callithrix jacchus ENSCJAG00000005396 I 0.861
usf1 Takifugu rubripes ENSTRUG00000005343 I 0.846
USF1 Macaca mulatta ENSMMUG00000002003 I 0.861
usf1 Xenopus tropicalis XB-GENE-5918718 I 0.861
USF1 Felis catus ENSFCAG00000012307 I 0.861
USF1 Homo sapiens ENSG00000158773 D 0.861
usf1 Gasterosteus aculeatus ENSGACG00000005115 I 0.846
USF1 Gorilla gorilla ENSGGOG00000003935 I 0.861
USF1 Loxodonta africana ENSLAFG00000011338 I 0.861
USF1 Equus caballus ENSECAG00000004755 I 0.861
USF1 Bos taurus ENSBTAG00000017873 I 0.861
USF1 Microcebus murinus ENSMICG00000007199 I 0.861
USF1 Myotis lucifugus ENSMLUG00000009179 I 0.861
USF1 Oryctolagus cuniculus ENSOCUG00000002352 I 0.861
USF1 Canis familiaris ENSCAFG00000012689 I 0.861
USF1 Monodelphis domestica ENSMODG00000005443 I 0.861
usf1 Danio rerio ENSDARG00000041689 N 0.846
Usf1 Mus musculus ENSMUSG00000026641 D 0.861
USF1 Vicugna pacos ENSVPAG00000008421 I 0.861
USF1 Cavia porcellus ENSCPOG00000003957 I 0.861
USF1 Tursiops truncatus ENSTTRG00000009151 I 0.861
USF1 Choloepus hoffmanni ENSCHOG00000011010 I 0.861
usf1.S Xenopus laevis XB-GENE-6255904 I 0.861
USF2 Macaca mulatta ENSMMUG00000011291 I 0.858
USF2 Equus caballus ENSECAG00000008583 I 0.858
USF2 Felis catus ENSFCAG00000008894 I 0.858
USF2 Bos taurus ENSBTAG00000017035 I 0.858
USF2 Homo sapiens ENSG00000105698 D 0.858
usf2 Gasterosteus aculeatus ENSGACG00000002481 N 0.863
USF2 Loxodonta africana ENSLAFG00000029360 I 0.858
USF2 Dasypus novemcinctus ENSDNOG00000003072 I 0.858
USF2 Microcebus murinus ENSMICG00000001519 I 0.858
USF2 Canis familiaris ENSCAFG00000007054 I 0.858
USF2 Sus scrofa ENSSSCG00000002885 I 0.858
USF2 Cavia porcellus ENSCPOG00000012147 I 0.858
Usf2 Mus musculus ENSMUSG00000058239 D 0.858
USF2 Callithrix jacchus ENSCJAG00000010451 I 0.847
USF2 Oryctolagus cuniculus ENSOCUG00000026259 I 0.858
USF2 Otolemur garnettii ENSOGAG00000001476 I 0.858
USF2 Procavia capensis ENSPCAG00000013941 I 0.858
USF2 Pan troglodytes ENSPTRG00000010836 I 0.858
USF2 Pteropus vampyrus ENSPVAG00000004161 I 0.858
Usf2 Rattus norvegicus ENSRNOG00000053725 I 0.858