bhlhe41 (Oryzias latipes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSORLG00000011401 T036429_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe41
M01739_2.00 		Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060 		0.889 0.944
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.889 0.944
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.889 0.944
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.889 0.944
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.889 0.944
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.889 0.944
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.889 0.944
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.889 0.926
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.889 0.926
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.889 0.926
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.889 0.926
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.889 0.926
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.889 0.926
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.889 0.926
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.889 0.926
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.889 0.926
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.889 0.926
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.889 0.926
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.889 0.926
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.889 0.926
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.889 0.926
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.889 0.926
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000014277 bHLH 48 102

Links

Other bHLH family TFs
Other Oryzias latipes TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28976.m000155 Ricinus communis 28976.m000155 N
30131.m007078 Ricinus communis 30131.m007078 I
30138.m003866 Ricinus communis 30138.m003866 I
Aquca_006_00040 Aquilegia coerulea Aquca_006_00040 I
Aquca_006_00360 Aquilegia coerulea Aquca_006_00360 I
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I
cassava32522.m1 Manihot esculenta cassava32522.m1 I
cassava35454.valid.m1 Manihot esculenta cassava35454.valid.m1 I
cassava41140.m1 Manihot esculenta cassava41140.m1 I
cassava46237.m1 Manihot esculenta cassava46237.m1 I
cassava9577.m1 Manihot esculenta cassava9577.m1 I
Ca_09362 Cicer arietinum Ca_09362 I
chr2.CM0021.50.nd Lotus japonicus chr2.CM0021.50.nd I
chr2.CM0124.640.nd Lotus japonicus chr2.CM0124.640.nd I
Ciclev10013334m.g Citrus clementina Ciclev10013334m.g I
Ciclev10027584m.g Citrus clementina Ciclev10027584m.g I
Cla005975 Citrullus lanatus Cla005975 I
Cla016748 Citrullus lanatus Cla016748 I
Cla020641 Citrullus lanatus Cla020641 I
Cucsa.174700 Cucumis sativus Cucsa.174700 I
Cucsa.238410 Cucumis sativus Cucsa.238410 I
Cucsa.284240 Cucumis sativus Cucsa.284240 I
Eucgr.H02330 Eucalyptus grandis Eucgr.H02330 I
evm.TU.supercontig_129.74 Carica papaya evm.TU.supercontig_129.74 I
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I
gene04504-v1.0-hybrid Fragaria vesca gene04504-v1.0-hybrid I
GLYMA01G09510 Glycine max GLYMA01G09510 I
GLYMA01G40370 Glycine max GLYMA01G40370 I
GLYMA02G13960 Glycine max GLYMA02G13960 I
GLYMA06G01240 Glycine max GLYMA06G01240 I
GLYMA11G12240 Glycine max GLYMA11G12240 I
GLYMA12G04440 Glycine max GLYMA12G04440 I
GLYMA17G17100 Glycine max GLYMA17G17100 I
GLYMA19G05050 Glycine max GLYMA19G05050 I
Gorai.001G251000 Gossypium raimondii Gorai.001G251000 I
Gorai.003G032100 Gossypium raimondii Gorai.003G032100 I
Gorai.007G056900 Gossypium raimondii Gorai.007G056900 I
Gorai.008G085200 Gossypium raimondii Gorai.008G085200 I
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I
Lus10011722.g Linum usitatissimum Lus10011722.g I
Lus10013059.g Linum usitatissimum Lus10013059.g I
Lus10019273.g Linum usitatissimum Lus10019273.g N
Lus10029101.g Linum usitatissimum Lus10029101.g I
MDP0000239026 Malus domestica MDP0000239026 I
MDP0000261154 Malus domestica MDP0000261154 N
MDP0000738631 Malus domestica MDP0000738631 I
MDP0000891899 Malus domestica MDP0000891899 I
mgf017392m Mimulus guttatus mgf017392m I
MTR_4g097440 Medicago truncatula MTR_4g097440 I
MTR_5g015090 Medicago truncatula MTR_5g015090 I
MTR_7g029400 Medicago truncatula MTR_7g029400 I
MTR_8g015250 Medicago truncatula MTR_8g015250 I
orange1.1g029952m.g Citrus sinensis orange1.1g029952m.g I
orange1.1g042014m.g Citrus sinensis orange1.1g042014m.g I
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I
PK01815.1 Cannabis sativa PK01815.1 N
Pm002353 Prunus mume Pm002353 I
Pm015434 Prunus mume Pm015434 I
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I
POPTR_0007s14740 Populus trichocarpa POPTR_0007s14740 I
POPTR_0008s11260 Populus trichocarpa POPTR_0008s11260 I
POPTR_0010s14530 Populus trichocarpa POPTR_0010s14530 I
POPTR_0017s14490 Populus trichocarpa POPTR_0017s14490 I
PRUPE_ppa011366mg Prunus persica PRUPE_ppa011366mg I
PRUPE_ppa011589mg Prunus persica PRUPE_ppa011589mg I
PRUPE_ppa011644mg Prunus persica PRUPE_ppa011644mg I
SapurV1A.0060s0610 Salix purpurea SapurV1A.0060s0610 I
SapurV1A.0084s0340 Salix purpurea SapurV1A.0084s0340 I
SapurV1A.0235s0220 Salix purpurea SapurV1A.0235s0220 N
SapurV1A.0432s0050 Salix purpurea SapurV1A.0432s0050 I
SapurV1A.0608s0130 Salix purpurea SapurV1A.0608s0130 N
Solyc01g109880.2 Solanum lycopersicum Solyc01g109880.2 I
TCM_000835 Theobroma cacao TCM_000835 I
VIT_00s0541g00020 Vitis vinifera VIT_00s0541g00020 N
VIT_01s0010g00930 Vitis vinifera VIT_01s0010g00930 I
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I
VIT_18s0001g13040 Vitis vinifera VIT_18s0001g13040 N