CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Ascl2 *(Rattus norvegicus)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00010 (HLH)	IPR001092	ENSRNOG00000020434	T037225_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Ascl2 M00117_2.00	Mus musculus	NVCABVTGBN	NVCABVTGBN	PBM Badis et al.(2009) Ascl2_2654	0.914	1.000
Ascl2 M02814_2.00	Mus musculus	RRCAGCTGYY	RRCAGCTGYY	SELEX Jolma et al.(2013) Ascl2_1	0.914	1.000
Ascl2 M08744_2.00	Mus musculus	RGCAGSTGB	VCASCTGCY	Misc Kulakovskiy et al.(2013) ASCL2_MOUSE.H11MO.0.C	0.914	1.000
ASCL2 M04207_2.00	Homo sapiens	NRCAGCTGYN	NRCAGCTGYN	SELEX Yin et al.(2017) ASCL2_eDBD_HT-SELEX	0.914	0.980
ASCL2 M04209_2.00	Homo sapiens	VCACRACGCD	HGCGTYGTGB	SELEX Yin et al.(2017) ASCL2_FL_HT-SELEX_1	0.914	0.980
ASCL2 M04210_2.00	Homo sapiens	NRCAGCTGYN	NRCAGCTGYN	SELEX Yin et al.(2017) ASCL2_FL_HT-SELEX_2	0.914	0.980
ASCL2 M04208_2.00	Homo sapiens	NRCAGCTGYN	NRCAGCTGYN	SELEX Yin et al.(2017) ASCL2_eDBD_Methyl-HT-SELEX	0.914	0.980
ASCL2 M04211_2.00	Homo sapiens	VRCAGCTGYB	VRCAGCTGYB	SELEX Yin et al.(2017) ASCL2_FL_Methyl-HT-SELEX	0.914	0.980
ASCL1 M04135_2.00	Homo sapiens	NRCASSTGYN	NRCASSTGYN	SELEX Yin et al.(2017) ASCL1_eDBD_HT-SELEX	0.871	0.880
ASCL1 M08055_2.00	Homo sapiens	NNRGCAGCTGSNN	NNSCAGCTGCYNN	ChIP-seq Mathelier et al.(2014) MA1100.1	0.871	0.880
ASCL1 M08730_2.00	Homo sapiens	NNVCASCTGCYBYN	NRVRGCAGSTGBNN	Misc Kulakovskiy et al.(2013) ASCL1_HUMAN.H11MO.0.A	0.871	0.880
Ascl1 M08748_2.00	Mus musculus	BHSCASCTGCYBBN	NVVRGCAGSTGSDV	Misc Kulakovskiy et al.(2013) ASCL1_MOUSE.H11MO.0.A	0.871	0.880
Ascl1 M09464_2.00	Mus musculus	NVCABCTGBBNN	NNVVCAGVTGBN	Misc Heinz et al.(2010) NeuralTubes-Ascl1_GSE55840	0.871	0.880
ASCL1 M09855_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MASH1_Q6_01	0.871	0.880
ASCL1 M09856_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MASH1_Q6_02	0.871	0.880
ASCL1 M09857_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MASH1_Q6	0.871	0.880
ASCL1 M04136_2.00	Homo sapiens	NRCAGCTGYN	NRCAGCTGYN	SELEX Yin et al.(2017) ASCL1_eDBD_Methyl-HT-SELEX	0.871	0.880
For this family, TFs with SR scores > 0.838* will likely have a similar motif*