MTR_4g097920 (Medicago truncatula)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 MTR_4g097920 T041662_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.861 0.700
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES90788 bHLH 152 201
KEH31549 bHLH 137 186

Links

Other bHLH family TFs
Other Medicago truncatula TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28179.m000478 Ricinus communis 28179.m000478 I 0.861
28179.m000479 Ricinus communis 28179.m000479 I 0.861
29804.m001498 Ricinus communis 29804.m001498 I 0.861
AMTR_s00033p00078670 Amborella trichopoda AMTR_s00033p00078670 I 0.861
Aquca_010_00012 Aquilegia coerulea Aquca_010_00012 I 0.861
AT2G22750 Arabidopsis thaliana AT2G22750 D 0.861
BGIOSGA010080 Oryza indica BGIOSGA010080 I 0.876
BGIOSGA013293 Oryza indica BGIOSGA013293 I 0.845
BGIOSGA013493 Oryza indica BGIOSGA013493 I 0.861
BGIOSGA037855 Oryza indica BGIOSGA037855 I 0.876
BHLH25 Arabidopsis thaliana AT4G37850 I 0.850
Bo1g003350 Brassica oleracea Bo1g003350 I 0.850
Bo3g153150 Brassica oleracea Bo3g153150 I 0.850
Bo4g150960 Brassica oleracea Bo4g150960 I 0.861
Bra010617 Brassica rapa Bra010617 I 0.850
Bra011790 Brassica rapa Bra011790 I 0.850
Bra030210 Brassica rapa Bra030210 I 0.861
Bra039924 Brassica rapa Bra039924 I 0.861
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I 0.841
BRADI1G12770 Brachypodium distachyon BRADI1G12770 I 0.876
BRADI4G00920 Brachypodium distachyon BRADI4G00920 I 0.876
Cagra.5392s0006 Capsella grandiflora Cagra.5392s0006 I 0.861
Cagra.6066s0006 Capsella grandiflora Cagra.6066s0006 I 0.850
Carubv10006834m.g Capsella rubella Carubv10006834m.g I 0.850
Carubv10025041m.g Capsella rubella Carubv10025041m.g I 0.861
cassava16019.m1 Manihot esculenta cassava16019.m1 I 0.861
cassava18197.valid.m1 Manihot esculenta cassava18197.valid.m1 I 0.861
cassava20178.m1 Manihot esculenta cassava20178.m1 I 0.861
cassava35671.valid.m1 Manihot esculenta cassava35671.valid.m1 I 0.861
cassava37087.valid.m1 Manihot esculenta cassava37087.valid.m1 I 0.861
Ca_02263 Cicer arietinum Ca_02263 I 0.847
Ca_02264 Cicer arietinum Ca_02264 I 0.846
Ca_05320 Cicer arietinum Ca_05320 I 0.868
Ca_09379 Cicer arietinum Ca_09379 I 0.865
chr2.CM0021.380.nc Lotus japonicus chr2.CM0021.380.nc I 0.839
chr2.CM0021.410.nc Lotus japonicus chr2.CM0021.410.nc I 0.857
chr2.CM0021.440.nc Lotus japonicus chr2.CM0021.440.nc I 0.846
chr3.LjT47G05.50.nc Lotus japonicus chr3.LjT47G05.50.nc I 0.844
chr5.CM0158.350.nd Lotus japonicus chr5.CM0158.350.nd I 0.844
Ciclev10027158m.g Citrus clementina Ciclev10027158m.g I 0.864
Ciclev10027504m.g Citrus clementina Ciclev10027504m.g I 0.849
Ciclev10028925m.g Citrus clementina Ciclev10028925m.g I 0.861
Cla000123 Citrullus lanatus Cla000123 I 0.861
Cucsa.218800 Cucumis sativus Cucsa.218800 I 0.861
estExt_fgenesh1_pg.C_310143 Physcomitrella patens estExt_fgenesh1_pg.C_310143 I 0.861
estExt_fgenesh1_pg.C_420092 Physcomitrella patens estExt_fgenesh1_pg.C_420092 I 0.861
Eucgr.E00277 Eucalyptus grandis Eucgr.E00277 I 0.855
Eucgr.H02389 Eucalyptus grandis Eucgr.H02389 I 0.858
Eucgr.H02390 Eucalyptus grandis Eucgr.H02390 I 0.858
Eucgr.H02398 Eucalyptus grandis Eucgr.H02398 I 0.849
Eucgr.I00634 Eucalyptus grandis Eucgr.I00634 I 0.861
Eucgr.I02518 Eucalyptus grandis Eucgr.I02518 I 0.861
evm.TU.supercontig_129.37 Carica papaya evm.TU.supercontig_129.37 I 0.861
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I 0.861
F775_11133 Aegilops tauschii F775_11133 I 0.845
F775_11371 Aegilops tauschii F775_11371 I 0.841
F775_11635 Aegilops tauschii F775_11635 I 0.876
F775_12608 Aegilops tauschii F775_12608 I 0.851
fgenesh2_kg.4__196__AT2G22750.1 Arabidopsis lyrata fgenesh2_kg.4__196__AT2G22750.1 I 0.861
gene05610-v1.0-hybrid Fragaria vesca gene05610-v1.0-hybrid I 0.861
gene05612-v1.0-hybrid Fragaria vesca gene05612-v1.0-hybrid I 0.861
gene07355-v1.0-hybrid Fragaria vesca gene07355-v1.0-hybrid I 0.845
GLYMA01G40620 Glycine max GLYMA01G40620 I 0.846
GLYMA05G23291 Glycine max GLYMA05G23291 I 0.888
GLYMA05G23530 Glycine max GLYMA05G23530 I 0.858
GLYMA07G30420 Glycine max GLYMA07G30420 I 0.849
GLYMA08G06831 Glycine max GLYMA08G06831 I 0.849
GLYMA11G04690 Glycine max GLYMA11G04690 I 0.864
GLYMA17G16720 Glycine max GLYMA17G16720 I 0.858
GLYMA17G16741 Glycine max GLYMA17G16741 I 0.888
Gorai.002G211500 Gossypium raimondii Gorai.002G211500 I 0.861
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I 0.849
Gorai.003G034700 Gossypium raimondii Gorai.003G034700 I 0.861
Gorai.007G228900 Gossypium raimondii Gorai.007G228900 I 0.861
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I 0.849
Gorai.008G087600 Gossypium raimondii Gorai.008G087600 I 0.845
Gorai.012G161900 Gossypium raimondii Gorai.012G161900 I 0.865
GRMZM2G019806 Zea mays GRMZM2G019806 I 0.861
GRMZM2G036554 Zea mays GRMZM2G036554 I 0.843
GRMZM2G049686 Zea mays GRMZM2G049686 I 0.876
GRMZM2G068604 Zea mays GRMZM2G068604 I 0.876
GRMZM2G082343 Zea mays GRMZM2G082343 I 0.861
GRMZM2G095899 Zea mays GRMZM2G095899 I 0.845
GRMZM2G120021 Zea mays GRMZM2G120021 I 0.876
GRMZM2G155043 Zea mays GRMZM2G155043 I 0.876
GRMZM2G355469 Zea mays GRMZM2G355469 I 0.876
GSMUA_Achr2G08590_001 Musa acuminata GSMUA_Achr2G08590_001 I 0.861
GSMUA_Achr3G26180_001 Musa acuminata GSMUA_Achr3G26180_001 I 0.861
GSMUA_Achr3G30620_001 Musa acuminata GSMUA_Achr3G30620_001 I 0.849
GSMUA_Achr4G03160_001 Musa acuminata GSMUA_Achr4G03160_001 I 0.861
GSMUA_Achr7G27600_001 Musa acuminata GSMUA_Achr7G27600_001 I 0.861
GSMUA_AchrUn_randomG15440_001 Musa acuminata GSMUA_AchrUn_randomG15440_001 I 0.861
LjSGA_047295.1 Lotus japonicus LjSGA_047295.1 I 0.855
LjT17L12.80.nd Lotus japonicus LjT17L12.80.nd I 0.858
LPERR03G24050 Leersia perrieri LPERR03G24050 I 0.876
LPERR03G27220 Leersia perrieri LPERR03G27220 I 0.861
LPERR12G16560 Leersia perrieri LPERR12G16560 I 0.876
Lus10003488.g Linum usitatissimum Lus10003488.g I 0.861
Lus10012457.g Linum usitatissimum Lus10012457.g I 0.858
Lus10020503.g Linum usitatissimum Lus10020503.g I 0.858
Lus10039639.g Linum usitatissimum Lus10039639.g I 0.861
MDP0000159571 Malus domestica MDP0000159571 I 0.861
MDP0000170202 Malus domestica MDP0000170202 I 0.861
MDP0000174149 Malus domestica MDP0000174149 I 0.861
MDP0000291132 Malus domestica MDP0000291132 I 0.861
MDP0000318216 Malus domestica MDP0000318216 I 0.864
MDP0000502440 Malus domestica MDP0000502440 I 0.861
mg004185m Mimulus guttatus mg004185m I 0.846
mg008709m Mimulus guttatus mg008709m I 0.846
MLOC_42946 Hordeum vulgare MLOC_42946 I 0.876
MLOC_64735 Hordeum vulgare MLOC_64735 I 0.841
MTR_4g097940 Medicago truncatula MTR_4g097940 I 0.890
MTR_5g014520 Medicago truncatula MTR_5g014520 I 0.846
OB03G36530 Oryza brachyantha OB03G36530 I 0.876
OBART03G29020 Oryza barthii OBART03G29020 I 0.845
OBART03G32580 Oryza barthii OBART03G32580 I 0.861
OBART12G19700 Oryza barthii OBART12G19700 I 0.876
OGLUM03G29200 Oryza glumaepatula OGLUM03G29200 I 0.845
OGLUM03G29270 Oryza glumaepatula OGLUM03G29270 I 0.876
OGLUM03G32210 Oryza glumaepatula OGLUM03G32210 I 0.861
OGLUM12G21470 Oryza glumaepatula OGLUM12G21470 I 0.876
OLONG_002504 Oryza longistaminata OLONG_002504 I 0.876
OLONG_017178 Oryza longistaminata OLONG_017178 I 0.876
OMERI03G25360 Oryza meridionalis OMERI03G25360 I 0.876
OMERI03G29350 Oryza meridionalis OMERI03G29350 I 0.861
OMERI12G15000 Oryza meridionalis OMERI12G15000 I 0.876
ONIVA03G07570 Oryza nivara ONIVA03G07570 I 0.876
ONIVA03G30250 Oryza nivara ONIVA03G30250 I 0.845
ONIVA03G34090 Oryza nivara ONIVA03G34090 I 0.861
OPUNC03G26580 Oryza punctata OPUNC03G26580 I 0.845
OPUNC03G26600 Oryza punctata OPUNC03G26600 I 0.876
OPUNC03G29750 Oryza punctata OPUNC03G29750 I 0.861
OPUNC12G17950 Oryza punctata OPUNC12G17950 I 0.876
orange1.1g021208m.g Citrus sinensis orange1.1g021208m.g I 0.861
orange1.1g026436m.g Citrus sinensis orange1.1g026436m.g I 0.849
orange1.1g037441m.g Citrus sinensis orange1.1g037441m.g I 0.864
ORGLA03G0268800 Oryza glaberrima ORGLA03G0268800 I 0.845
ORGLA03G0269200 Oryza glaberrima ORGLA03G0269200 I 0.876
ORGLA03G0295100 Oryza glaberrima ORGLA03G0295100 I 0.861
ORGLA12G0170500 Oryza glaberrima ORGLA12G0170500 I 0.876
ORUFI03G30180 Oryza rufipogon ORUFI03G30180 I 0.845
ORUFI03G33950 Oryza rufipogon ORUFI03G33950 I 0.861
ORUFI12G22050 Oryza rufipogon ORUFI12G22050 I 0.876
OS03G0671800 Oryza sativa OS03G0671800 I 0.844
OS03G0725800 Oryza sativa OS03G0725800 I 0.861
OS12G0632600 Oryza sativa OS12G0632600 I 0.876
Pavir.Ia01004 Panicum virgatum Pavir.Ia01004 I 0.876
Pavir.Ia01038 Panicum virgatum Pavir.Ia01038 I 0.876
Pavir.Ia01059 Panicum virgatum Pavir.Ia01059 I 0.876
Pavir.Ia03339 Panicum virgatum Pavir.Ia03339 I 0.851
Pavir.Ib04096 Panicum virgatum Pavir.Ib04096 I 0.876
Pavir.Ib04188 Panicum virgatum Pavir.Ib04188 I 0.876
Pavir.Ib04190 Panicum virgatum Pavir.Ib04190 I 0.876
Pavir.J01849 Panicum virgatum Pavir.J01849 I 0.861
Pavir.J26871 Panicum virgatum Pavir.J26871 I 0.843
Pavir.J30022 Panicum virgatum Pavir.J30022 I 0.876
Pavir.J35103 Panicum virgatum Pavir.J35103 I 0.861
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I 0.861
PDK_20s1524891g002 Phoenix dactylifera PDK_20s1524891g002 I 0.863
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I 0.861
PK09122.1 Cannabis sativa PK09122.1 I 0.861
PK11573.1 Cannabis sativa PK11573.1 I 0.861
Pm002304 Prunus mume Pm002304 I 0.841
Pm002305 Prunus mume Pm002305 I 0.861
Pm021008 Prunus mume Pm021008 I 0.861
POPTR_0001s29400 Populus trichocarpa POPTR_0001s29400 I 0.861
POPTR_0005s09810 Populus trichocarpa POPTR_0005s09810 I 0.861
POPTR_0009s08500 Populus trichocarpa POPTR_0009s08500 I 0.861
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I 0.841
PRUPE_ppa008130mg Prunus persica PRUPE_ppa008130mg I 0.861
PRUPE_ppa017640mg Prunus persica PRUPE_ppa017640mg I 0.861
SapurV1A.0019s0910 Salix purpurea SapurV1A.0019s0910 I 0.861
SapurV1A.0279s0180 Salix purpurea SapurV1A.0279s0180 I 0.861
SapurV1A.0821s0050 Salix purpurea SapurV1A.0821s0050 I 0.847
SapurV1A.3034s0010 Salix purpurea SapurV1A.3034s0010 I 0.861
Sb01g009590 Sorghum bicolor Sb01g009590 I 0.861
Sb01g012250 Sorghum bicolor Sb01g012250 I 0.845
Sb01g012260 Sorghum bicolor Sb01g012260 I 0.876
Sb01g012280 Sorghum bicolor Sb01g012280 I 0.876
Sb06g017460 Sorghum bicolor Sb06g017460 I 0.876
Sb08g022760 Sorghum bicolor Sb08g022760 I 0.876
SELMODRAFT_34848 Selaginella moellendorffii SELMODRAFT_34848 I 0.861
SELMODRAFT_48361 Selaginella moellendorffii SELMODRAFT_48361 I 0.861
Si011709m.g Setaria italica Si011709m.g I 0.851
Si011972m.g Setaria italica Si011972m.g I 0.876
Si022171m.g Setaria italica Si022171m.g I 0.845
Si024086m.g Setaria italica Si024086m.g I 0.843
Si036185m.g Setaria italica Si036185m.g I 0.876
Si036393m.g Setaria italica Si036393m.g I 0.861
Si038721m.g Setaria italica Si038721m.g I 0.876
Si039325m.g Setaria italica Si039325m.g I 0.876
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I 0.861
TCM_000894 Theobroma cacao TCM_000894 I 0.849
TCM_000895 Theobroma cacao TCM_000895 I 0.861
TCM_006357 Theobroma cacao TCM_006357 I 0.858
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I 0.861
Thhalv10025715m.g Eutrema salsugineum Thhalv10025715m.g I 0.850
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I 0.841
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I 0.841
Traes_4DS_6A9EB40A4 Triticum aestivum Traes_4DS_6A9EB40A4 I 0.876
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I 0.841
TRIUR3_05977 Triticum urartu TRIUR3_05977 I 0.876
TRIUR3_13152 Triticum urartu TRIUR3_13152 I 0.851
TRIUR3_26880 Triticum urartu TRIUR3_26880 I 0.841
TRIUR3_29908 Triticum urartu TRIUR3_29908 I 0.845
VIT_00s0824g00020 Vitis vinifera VIT_00s0824g00020 I 0.849
VIT_00s0927g00010 Vitis vinifera VIT_00s0927g00010 I 0.849
VIT_03s0088g01240 Vitis vinifera VIT_03s0088g01240 I 0.861
VIT_07s0205g00160 Vitis vinifera VIT_07s0205g00160 I 0.861