ATMYC2 (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 scaffold_103634.1 T044497_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.914 1.000
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.914 1.000
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.914 0.979
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.914 0.979
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.914 0.958
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.890 0.896
BHLH13
M01698_2.00 		Arabidopsis thaliana
MCACGTGV
BCACGTGK		 PBM
Weirauch et al.(2014)
pTH7565 		0.879 0.917
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.858 0.604
PK09702.1
M01124_2.00 		Cannabis sativa
GCACGTGV
BCACGTGC		 PBM
Lambert et al.(2019)
pTH11374 		0.840 0.646
BHLH14
M09785_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT4G00870_01 		0.840 0.792
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_103634.1 bHLH 453 500

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

561 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.000
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.000
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.000
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.000
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.000
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.000
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.000
Ca_24123 Cicer arietinum Ca_24123 I 0.000
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.000
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.000
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.000
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.000
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.000
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.000
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.000
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.000
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.000
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.000
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.000
MDP0000128924 Malus domestica MDP0000128924 I 0.000
MDP0000939633 Malus domestica MDP0000939633 I 0.000
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.000
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.000
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.000
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.000
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.000
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.000
OB01G12600 Oryza brachyantha OB01G12600 I 0.000
OBART01G02610 Oryza barthii OBART01G02610 I 0.000
OBART01G27360 Oryza barthii OBART01G27360 I 0.000
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.000
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.000
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.000
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.000
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.000
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.000
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.000
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.000
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.000
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.000
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.000
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.000
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.000
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.000
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.000
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.000
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.000
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.000
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.000
OS01G0140700 Oryza sativa OS01G0140700 I 0.000
OS01G0141000 Oryza sativa OS01G0141000 I 0.000
OS01G0693400 Oryza sativa OS01G0693400 I 0.000
OS05G0549800 Oryza sativa OS05G0549800 I 0.000
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.000
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.000
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.000
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.000
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.000
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.000
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.000
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.000
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.000
PK15652.1 Cannabis sativa PK15652.1 I 0.000
Pm029015 Prunus mume Pm029015 I 0.000
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.000
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.000
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.000
Si001909m.g Setaria italica Si001909m.g I 0.000
Si004045m.g Setaria italica Si004045m.g I 0.000
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.000
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.000
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.000
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.000
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.000
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.000
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.000
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.000
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.000
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.000