Carubv10001721m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10001721m.g T049331_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH80
M06722_2.00 		Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH80_col_a 		0.914 0.961
BHLH80
M06723_2.00 		Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH		 Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a 		0.914 0.961
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.873 0.882
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001721m bHLH 196 246

Links

Other bHLH family TFs
Other Capsella rubella TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015659 Calypte anna Aan_R015659 I
AB04741.1 Alternaria brassicicola AB04741.1 I
Afo_R011092 Aptenodytes forsteri Afo_R011092 I
ATEG_05203 Aspergillus terreus CADATEAG00005116 I
A_07284 Schistosoma haematobium A_07284 I
CapteG100741 Capitella teleta CapteG100741 I
CapteG49895 Capitella teleta CapteG49895 I
CapteG70907 Capitella teleta CapteG70907 I
CapteG88319 Capitella teleta CapteG88319 I
CCM_02544 Cordyceps militaris CCM_02544 I
COCC4DRAFT_49159 Bipolaris maydis COCC4DRAFT_49159 I
COCCADRAFT_44321 Bipolaris zeicola COCCADRAFT_44321 I
COCMIDRAFT_53102 Bipolaris oryzae COCMIDRAFT_53102 I
COCSADRAFT_107886 Bipolaris sorokiniana COCSADRAFT_107886 I
COCVIDRAFT_49416 Bipolaris victoriae COCVIDRAFT_49416 I
D915_04768 Fasciola hepatica D915_04768 I
D915_05481 Fasciola hepatica D915_05481 I
DILT_0000254701 Diphyllobothrium latum DILT_0000254701 I
DOTSEDRAFT_78718 Dothistroma septosporum DOTSEDRAFT_78718 I
ECPE_0000388901 Echinostoma caproni ECPE_0000388901 I
ENSAMXG00000000335 Astyanax mexicanus ENSAMXG00000000335 I
ENSMEUG00000004557 Macropus eugenii ENSMEUG00000004557 I
ENSPFOG00000006638 Poecilia formosa ENSPFOG00000006638 I
ENSPTRG00000039451 Pan troglodytes ENSPTRG00000039451 I
ENSSSCG00000009724 Sus scrofa ENSSSCG00000009724 I
ENSXMAG00000012663 Xiphophorus maculatus ENSXMAG00000012663 I
estExt_Genewise1.C_110663 Cochliobolus heterostrophus C5 estExt_Genewise1.C_110663 I
FFUJ_12565 Fusarium fujikuroi FFUJ_12565 I
FGRRES_07914 Fusarium graminearum FGRRES_07914 D
FGRRES_17555 Fusarium graminearum FGRRES_17555 I
FOXG_13545 Fusarium oxysporum FOXG_13545 I
Gfo_R005354 Geospiza fortis Gfo_R005354 I
HelroG171177 Helobdella robusta HelroG171177 I
HMEL002096 Heliconius melpomene HMEL002096 I
HmN_000921700 Hymenolepis microstoma HmN_000921700 I
HmN_000922600 Hymenolepis microstoma HmN_000922600 I
HNAJ_0001179801 Hymenolepis nana HNAJ_0001179801 I
IRX3 Dasypus novemcinctus ENSDNOG00000012985 I
irx7 Takifugu rubripes ENSTRUG00000007926 I
irx7 Gasterosteus aculeatus ENSGACG00000011160 I
L892_g27282 Steinernema scapterisci L892_g27282 I
L898_g17064 Steinernema monticolum L898_g17064 I
PTT_11733 Pyrenophora teres PTT_11733 I
PXEA_0002454601 Protopolystoma xenopodis PXEA_0002454601 I
SCUD_0000714801 Schistosoma curassoni SCUD_0000714801 I
SETTUDRAFT_162538 Setosphaeria turcica SETTUDRAFT_162538 I
Sjc_0052220 Schistosoma japonicum Sjc_0052220 I
SMRZ_0000148301 Schistosoma margrebowiei SMRZ_0000148301 I
SNOG_06363 Phaeosphaeria nodorum SNOG_06363 I
SNOG_06363 Stagonospora nodorum SNOG_06363 I
SPER_0001325101 Spirometra erinaceieuropaei SPER_0001325101 I
SSLN_0000846501 Schistocephalus solidus SSLN_0000846501 I
TASK_0000658901 Taenia asiatica TASK_0000658901 I
TsM_000760900 Taenia solium TsM_000760900 I
TTAC_0000670801 Hydatigera taeniaeformis TTAC_0000670801 I
Z519_11142 Cladophialophora bantiana Z519_11142 I