Pavir.Eb00095 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Eb00095 T050752_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20225.1
M01128_2.00 		Cannabis sativa
NCACGTGVN
NBCACGTGN		 PBM
Lambert et al.(2019)
pTH11274 		0.858 0.796
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb00095.1.p bHLH 127 175

Links

Other bHLH family TFs
Other Panicum virgatum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29900.m001610 Ricinus communis 29900.m001610 I 0.864
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I 0.854
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I 0.867
BGIOSGA003013 Oryza indica BGIOSGA003013 I 0.903
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N 0.846
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I 0.842
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N 0.894
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I 0.885
cassava32077.m1 Manihot esculenta cassava32077.m1 I 0.888
Ciclev10016289m.g Citrus clementina Ciclev10016289m.g I 0.858
Cla019977 Citrullus lanatus Cla019977 I 0.843
Cucsa.213230 Cucumis sativus Cucsa.213230 I 0.843
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I 0.856
Eucgr.K01103 Eucalyptus grandis Eucgr.K01103 N 0.849
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I 0.858
gene29828-v1.0-hybrid Fragaria vesca gene29828-v1.0-hybrid I 0.914
GLYMA07G32690 Glycine max GLYMA07G32690 I 0.858
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I 0.885
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I 0.844
GRMZM2G016039 Zea mays GRMZM2G016039 I 0.914
GRMZM2G043854 Zea mays GRMZM2G043854 I 0.842
GRMZM2G166642 Zea mays GRMZM2G166642 I 0.914
GSMUA_Achr10G14370_001 Musa acuminata GSMUA_Achr10G14370_001 N 0.857
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I 0.842
GSMUA_Achr2G20040_001 Musa acuminata GSMUA_Achr2G20040_001 N 0.881
GSMUA_Achr3G03510_001 Musa acuminata GSMUA_Achr3G03510_001 N 0.873
GSMUA_Achr7G10740_001 Musa acuminata GSMUA_Achr7G10740_001 I 0.851
LPERR01G07000 Leersia perrieri LPERR01G07000 I 0.873
LPERR03G10060 Leersia perrieri LPERR03G10060 I 0.842
Lus10001885.g Linum usitatissimum Lus10001885.g I 0.858
Lus10013917.g Linum usitatissimum Lus10013917.g I 0.855
MDP0000249969 Malus domestica MDP0000249969 I 0.866
MDP0000256492 Malus domestica MDP0000256492 N 0.893
mgf022146m Mimulus guttatus mgf022146m N 0.846
MLOC_64390 Hordeum vulgare MLOC_64390 I 0.914
OB01G17480 Oryza brachyantha OB01G17480 I 0.903
OB03G21490 Oryza brachyantha OB03G21490 I 0.842
OBART03G11320 Oryza barthii OBART03G11320 I 0.842
OGLUM01G08450 Oryza glumaepatula OGLUM01G08450 I 0.903
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I 0.842
OLONG_004075 Oryza longistaminata OLONG_004075 I 0.842
OMERI01G07330 Oryza meridionalis OMERI01G07330 I 0.903
ONIVA01G09540 Oryza nivara ONIVA01G09540 I 0.903
ONIVA03G12280 Oryza nivara ONIVA03G12280 I 0.842
OPUNC01G07130 Oryza punctata OPUNC01G07130 I 0.903
orange1.1g024670m.g Citrus sinensis orange1.1g024670m.g I 0.858
ORGLA01G0065100 Oryza glaberrima ORGLA01G0065100 I 0.903
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I 0.842
ORUFI01G08040 Oryza rufipogon ORUFI01G08040 I 0.903
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I 0.842
OS01G0218100 Oryza sativa OS01G0218100 I 0.903
OS03G0260600 Oryza sativa OS03G0260600 I 0.842
Pavir.Ea00157 Panicum virgatum Pavir.Ea00157 I 0.914
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I 0.842
PGSC0003DMG400010208 Solanum tuberosum PGSC0003DMG400010208 I 0.849
PK20225.1 Cannabis sativa PK20225.1 D 0.858
PRUPE_ppa021837mg Prunus persica PRUPE_ppa021837mg N 0.893
SapurV1A.0029s0640 Salix purpurea SapurV1A.0029s0640 N 0.866
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I 0.846
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I 0.846
Sb01g040450 Sorghum bicolor Sb01g040450 I 0.842
Sb03g001730 Sorghum bicolor Sb03g001730 I 0.914
Si002517m.g Setaria italica Si002517m.g I 0.902
Si039730m.g Setaria italica Si039730m.g I 0.842
Solyc02g076920.2 Solanum lycopersicum Solyc02g076920.2 I 0.849
TCM_029711 Theobroma cacao TCM_029711 I 0.885
TRAES3BF011300020CFD_g Triticum aestivum TRAES3BF011300020CFD_g I 0.914
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I 0.888