usf2.S (Xenopus laevis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-6253011 T051854_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
USF2
M04076_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF2_eDBD_HT-SELEX 		0.886 0.944
USF2
M08050_2.00 		Homo sapiens
NNVYCACGTGACHNNN
NNNDGTCACGTGRBNN		 ChIP-seq
Mathelier et al.(2014)
MA0526.2 		0.886 0.944
USF2
M07785_2.00 		Homo sapiens
NGTCACGTGRBSVVV
BBBSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF2_Stanford 		0.886 0.944
USF2
M07786_2.00 		Homo sapiens
NVGTCACGTGRBSVVV
BBBSVYCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF2_Stanford 		0.886 0.944
USF2
M07787_2.00 		Homo sapiens
RGTCACGTGVB
VBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_USF2_Stanford 		0.886 0.944
USF2
M07788_2.00 		Homo sapiens
NGTCACGTGRBSV
BSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF2_Stanford 		0.886 0.944
USF2
M07789_2.00 		Homo sapiens
RGTCACGTGRBSV
BSVYCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
K562_USF2_Stanford 		0.886 0.944
USF2
M08715_2.00 		Homo sapiens
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN		 Misc
Kulakovskiy et al.(2013)
USF2_HUMAN.H11MO.0.A 		0.886 0.944
USF2
M09812_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_01 		0.886 0.944
USF2
M09813_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_02 		0.886 0.944
USF2
M09814_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6_01 		0.886 0.944
USF2
M09815_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6 		0.886 0.944
USF2
M04077_2.00 		Homo sapiens
VNCAYGTGACN
NGTCACRTGNB		 SELEX
Yin et al.(2017)
USF2_eDBD_Methyl-HT-SELEX 		0.886 0.944
Usf2
M01752_2.00 		Mus musculus
NNCACGTGAN
NTCACGTGNN		 PBM
Weirauch et al.(2014)
pTH5265 		0.843 0.926
Usf2
M08777_2.00 		Mus musculus
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN		 Misc
Kulakovskiy et al.(2013)
USF2_MOUSE.H11MO.0.A 		0.843 0.926
Usf2
M09479_2.00 		Mus musculus
NNCAYGTGVY
RBCACRTGNN		 Misc
Heinz et al.(2010)
C2C12-Usf2_GSE36030 		0.843 0.926
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH87339 bHLH 200 255

Links

Other bHLH family TFs
Other Xenopus laevis TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG004656.1 Alligator sinensis Alligator_sinensis_CCG004656.1 I 0.886
Cmyd_10000422 Chelonia mydas Cmyd_10000422 I 0.861
ENSAMEG00000000235 Ailuropoda melanoleuca ENSAMEG00000000235 I 0.886
ENSAMXG00000009564 Astyanax mexicanus ENSAMXG00000009564 I 0.861
ENSCSAG00000004521 Chlorocebus sabaeus ENSCSAG00000004521 I 0.886
ENSGMOG00000013274 Gadus morhua ENSGMOG00000013274 I 0.861
ENSLACG00000003269 Latimeria chalumnae ENSLACG00000003269 I 0.861
ENSLOCG00000005321 Lepisosteus oculatus ENSLOCG00000005321 I 0.861
ENSMLUG00000028063 Myotis lucifugus ENSMLUG00000028063 I 0.861
ENSMPUG00000007099 Mustela putorius furo ENSMPUG00000007099 I 0.886
ENSNLEG00000011114 Nomascus leucogenys ENSNLEG00000011114 I 0.886
ENSOARG00000004745 Ovis aries ENSOARG00000004745 I 0.886
ENSP00000222305-D1 Bos grunniens ENSP00000222305-D1 I 0.886
ENSPANG00000011040 Papio anubis ENSPANG00000011040 I 0.886
ENSPPYG00000009855 Pongo abelii ENSPPYG00000009855 I 0.886
ENSPSIG00000008600 Pelodiscus sinensis ENSPSIG00000008600 I 0.861
ENSSTOG00000022219 Ictidomys tridecemlineatus ENSSTOG00000022219 I 0.886
Myotis_brandtii_Usf2_10035177 Myotis brandtii Myotis_brandtii_Usf2_10035177 I 0.861
Ogr06118 Ophisaurus gracilis Ogr06118 I 0.861
Pvit_11612 Pogona vitticeps Pvit_11612 I 0.861
usf1 Tetraodon nigroviridis ENSTNIG00000014361 I 0.848
usf1 Takifugu rubripes ENSTRUG00000005343 I 0.848
usf1 Gasterosteus aculeatus ENSGACG00000005115 I 0.848
usf1 Oryzias latipes ENSORLG00000015402 I 0.848
USF2 Takifugu rubripes ENSTRUG00000005182 I 0.861
USF2 Sus scrofa ENSSSCG00000002885 I 0.886
Usf2 Rattus norvegicus ENSRNOG00000053725 I 0.843
USF2 Pteropus vampyrus ENSPVAG00000004161 I 0.886
USF2 Canis familiaris ENSCAFG00000007054 I 0.886
USF2 Pan troglodytes ENSPTRG00000010836 I 0.886
USF2 Bos taurus ENSBTAG00000017035 I 0.886
USF2 Homo sapiens ENSG00000105698 D 0.886
USF2 Oryzias latipes ENSORLG00000015114 I 0.861
USF2 Felis catus ENSFCAG00000008894 I 0.886
USF2 Gasterosteus aculeatus ENSGACG00000012475 I 0.861
USF2 Equus caballus ENSECAG00000008583 I 0.886
USF2 Dasypus novemcinctus ENSDNOG00000003072 I 0.886
USF2 Loxodonta africana ENSLAFG00000029360 I 0.886
usf2 Danio rerio ENSDARG00000020228 I 0.861
USF2 Microcebus murinus ENSMICG00000001519 I 0.886
USF2 Cavia porcellus ENSCPOG00000012147 I 0.886
USF2 Macaca mulatta ENSMMUG00000011291 I 0.886
USF2 Monodelphis domestica ENSMODG00000013843 I 0.861
USF2 Callithrix jacchus ENSCJAG00000010451 I 0.875
Usf2 Mus musculus ENSMUSG00000058239 D 0.843
USF2 Anolis carolinensis ENSACAG00000010293 I 0.861
USF2 Oryctolagus cuniculus ENSOCUG00000026259 I 0.886
USF2 Otolemur garnettii ENSOGAG00000001476 I 0.886
USF2 Procavia capensis ENSPCAG00000013941 I 0.886
usf2.L Xenopus laevis XB-GENE-991248 I 0.889