SMRZ_0001201801 (Schistosoma margrebowiei)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 SMRZ_0001201801 T054891_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLHE23
M02784_2.00 		Homo sapiens
RVCATATGBY
RVCATATGBY		 SELEX
Jolma et al.(2013)
BHLHE23_1 		0.914 0.944
BHLHE23
M04108_2.00 		Homo sapiens
AVCATATGBY
RVCATATGBT		 SELEX
Yin et al.(2017)
BHLHE23_eDBD_HT-SELEX 		0.914 0.944
BHLHE23
M04110_2.00 		Homo sapiens
RVCATATGBY
RVCATATGBY		 SELEX
Yin et al.(2017)
BHLHE23_FL_HT-SELEX 		0.914 0.944
BHLHE23
M04109_2.00 		Homo sapiens
AVCATATGBY
RVCATATGBT		 SELEX
Yin et al.(2017)
BHLHE23_eDBD_Methyl-HT-SELEX 		0.914 0.944
BHLHE23
M04111_2.00 		Homo sapiens
RVCATATGBY
RVCATATGBY		 SELEX
Yin et al.(2017)
BHLHE23_FL_Methyl-HT-SELEX 		0.914 0.944
Bhlhe22
M01729_2.00 		Mus musculus
NVCATATGGN
NCCATATGBN		 PBM
Weirauch et al.(2014)
pTH5267 		0.914 0.926
BHLHE22
M02804_2.00 		Homo sapiens
NAVCATATGBTN
NAVCATATGBTN		 SELEX
Jolma et al.(2013)
BHLHE22_1 		0.914 0.926
BHLHE22
M04199_2.00 		Homo sapiens
AVCATATGBY
RVCATATGBT		 SELEX
Yin et al.(2017)
BHLHE22_eDBD_HT-SELEX 		0.914 0.926
BHLHE22
M04200_2.00 		Homo sapiens
AVCATATGBY
RVCATATGBT		 SELEX
Yin et al.(2017)
BHLHE22_eDBD_Methyl-HT-SELEX 		0.914 0.926
Oli
M03618_2.00 		Drosophila melanogaster
AMCATATGKY
RMCATATGKT		 SELEX
Nitta et al.(2015)
Oli_1 		0.890 0.944
Oli
M05985_2.00 		Drosophila melanogaster
SACCATATGKY
RMCATATGGTS		 B1H
Zhu et al.(2011)
Oli_da_SANGER_5_1_FBgn0032651 		0.890 0.944
Oli
M05986_2.00 		Drosophila melanogaster
AHSBNRCCATMTGKY
RMCAKATGGYNVSDT		 B1H
Zhu et al.(2011)
Oli_da_SANGER_5_2_FBgn0032651 		0.890 0.944
Oli
M05987_2.00 		Drosophila melanogaster
MCATCTGKY
RMCAGATGK		 B1H
Zhu et al.(2011)
Oli_da_SANGER_5_3_FBgn0032651 		0.890 0.944
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMRZ_0001201801-mRNA-1 bHLH 106 159

Links

Other bHLH family TFs
Other Schistosoma margrebowiei TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g014660 Brassica oleracea Bo9g014660 I 0.000
Bostr.25993s0288 Boechera stricta Bostr.25993s0288 I 0.000
Bra028690 Brassica rapa Bra028690 I 0.000
Bra035919 Brassica rapa Bra035919 I 0.000
cassava4507.m1 Manihot esculenta cassava4507.m1 I 0.000
chr5.CM0909.360.nc Lotus japonicus chr5.CM0909.360.nc I 0.000
Ciclev10024298m.g Citrus clementina Ciclev10024298m.g N 0.000
Cla003678 Citrullus lanatus Cla003678 I 0.000
Cla021384 Citrullus lanatus Cla021384 I 0.000
Cucsa.129330 Cucumis sativus Cucsa.129330 I 0.000
gene21167-v1.0-hybrid Fragaria vesca gene21167-v1.0-hybrid I 0.000
GLYMA10G33810 Glycine max GLYMA10G33810 I 0.000
Gorai.007G086100 Gossypium raimondii Gorai.007G086100 I 0.000
Gorai.008G108600 Gossypium raimondii Gorai.008G108600 I 0.000
GSMUA_Achr1G00490_001 Musa acuminata GSMUA_Achr1G00490_001 I 0.000
Lus10013959.g Linum usitatissimum Lus10013959.g I 0.000
MDP0000180950 Malus domestica MDP0000180950 I 0.000
mgf021756m Mimulus guttatus mgf021756m I 0.000
mgf025885m Mimulus guttatus mgf025885m I 0.000
orange1.1g045684m.g Citrus sinensis orange1.1g045684m.g N 0.000
PGSC0003DMG400007027 Solanum tuberosum PGSC0003DMG400007027 I 0.000
PGSC0003DMG400025989 Solanum tuberosum PGSC0003DMG400025989 N 0.000
PGSC0003DMG400026046 Solanum tuberosum PGSC0003DMG400026046 I 0.000
PGSC0003DMG400026049 Solanum tuberosum PGSC0003DMG400026049 I 0.000
PGSC0003DMG400036566 Solanum tuberosum PGSC0003DMG400036566 I 0.000
PGSC0003DMG400041045 Solanum tuberosum PGSC0003DMG400041045 I 0.000
PGSC0003DMG400046672 Solanum tuberosum PGSC0003DMG400046672 N 0.000
PK26398.1 Cannabis sativa PK26398.1 I 0.000
Solyc01g090300.2 Solanum lycopersicum Solyc01g090300.2 I 0.000
Solyc01g090310.2 Solanum lycopersicum Solyc01g090310.2 I 0.000
Solyc01g090320.2 Solanum lycopersicum Solyc01g090320.2 N 0.000
Solyc01g090340.2 Solanum lycopersicum Solyc01g090340.2 N 0.000
Solyc01g090370.1 Solanum lycopersicum Solyc01g090370.1 I 0.000
Solyc05g050790.1 Solanum lycopersicum Solyc05g050790.1 I 0.000
TCM_005704 Theobroma cacao TCM_005704 I 0.000
VIT_15s0021g01590 Vitis vinifera VIT_15s0021g01590 I 0.000
VIT_15s0021g01600 Vitis vinifera VIT_15s0021g01600 I 0.000
VIT_15s0021g01610 Vitis vinifera VIT_15s0021g01610 I 0.000