Bra018800 (Brassica rapa)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 Bra018800 T057462_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.814 0.758
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.814 0.758
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.792 0.677
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.792 0.677
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.792 0.677
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.792 0.677
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.792 0.677
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.792 0.677
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.790 0.581
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.789 0.565
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.785 0.548
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.785 0.548
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra018800.1-P bZIP 287 349

Links

Other bZIP family TFs
Other Brassica rapa TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000008139 Ailuropoda melanoleuca ENSAMEG00000008139 I 0.000
ENSCSAG00000006278 Chlorocebus sabaeus ENSCSAG00000006278 I 0.000
ENSMMUP00000019015 Macaca fascicularis ENSMMUP00000019015 I 0.000
ENSMPUG00000000169 Mustela putorius furo ENSMPUG00000000169 I 0.000
ENSNLEG00000017881 Nomascus leucogenys ENSNLEG00000017881 I 0.000
ENSP00000301042-D1 Bos grunniens ENSP00000301042-D1 I 0.000
ENSPANG00000014075 Papio anubis ENSPANG00000014075 I 0.000
ENSPPYG00000004457 Pongo abelii ENSPPYG00000004457 I 0.000
ENSSTOG00000001970 Ictidomys tridecemlineatus ENSSTOG00000001970 I 0.000
ENSTSYG00000001375 Tarsius syrichta ENSTSYG00000001375 I 0.000
Myotis_brandtii_ZNF641_10022121 Myotis brandtii Myotis_brandtii_ZNF641_10022121 I 0.000
Zfp641 Mus musculus ENSMUSG00000022987 I 0.000
Zfp641 Rattus norvegicus ENSRNOG00000032447 I 0.000
Zfp641 Dipodomys ordii ENSDORG00000011810 I 0.000
ZNF641 Procavia capensis ENSPCAG00000005206 I 0.000
ZNF641 Bos taurus ENSBTAG00000016496 I 0.000
ZNF641 Canis familiaris ENSCAFG00000009010 I 0.000
ZNF641 Callithrix jacchus ENSCJAG00000020716 I 0.000
ZNF641 Tursiops truncatus ENSTTRG00000015952 I 0.000
ZNF641 Cavia porcellus ENSCPOG00000002770 I 0.000
ZNF641 Tupaia belangeri ENSTBEG00000002375 I 0.000
ZNF641 Dasypus novemcinctus ENSDNOG00000014189 I 0.000
ZNF641 Sus scrofa ENSSSCG00000021654 I 0.000
ZNF641 Sorex araneus ENSSARG00000009301 I 0.000
ZNF641 Pan troglodytes ENSPTRG00000004878 I 0.000
ZNF641 Felis catus ENSFCAG00000001972 I 0.000
ZNF641 Equus caballus ENSECAG00000022720 I 0.000
ZNF641 Otolemur garnettii ENSOGAG00000005519 I 0.000
ZNF641 Oryctolagus cuniculus ENSOCUG00000005451 I 0.000
ZNF641 Erinaceus europaeus ENSEEUG00000002648 I 0.000
ZNF641 Echinops telfairi ENSETEG00000017660 I 0.000
ZNF641 Macaca mulatta ENSMMUG00000014484 I 0.000
ZNF641 Myotis lucifugus ENSMLUG00000003695 I 0.000
ZNF641 Microcebus murinus ENSMICG00000007360 I 0.000
ZNF641 Loxodonta africana ENSLAFG00000029324 I 0.000
ZNF641 Gorilla gorilla ENSGGOG00000013643 I 0.000
ZNF641 Homo sapiens ENSG00000167528 D 0.000