CpipJ_CPIJ000614 (Culex pipiens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 CpipJ_CPIJ000614 T077375_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ci
M03672_2.00 		Drosophila melanogaster
NCGMCCACMN
NKGTGGKCGN		 SELEX
Nitta et al.(2015)
ci_1 		0.812 0.930
ci
M06084_2.00 		Drosophila melanogaster
RGMCCACMCAC
GTGKGTGGKCY		 B1H
Zhu et al.(2011)
Ci_SANGER_5_FBgn0004859 		0.812 0.930
ci
M02644_2.00 		Drosophila melanogaster
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
Ci 		0.812 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ000614-RA C2H2 ZF 299 324
CpipJ_CPIJ000614-RA C2H2 ZF 332 359
CpipJ_CPIJ000614-RA C2H2 ZF 365 389
CpipJ_CPIJ000614-RA C2H2 ZF 395 420
CpipJ_CPIJ000614-RA C2H2 ZF 426 451

Links

Other C2H2 ZF family TFs
Other Culex pipiens TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_058_00064 Aquilegia coerulea Aquca_058_00064 N 0.000
Ca_02696 Cicer arietinum Ca_02696 N 0.000
chr3.CM0106.470.nd Lotus japonicus chr3.CM0106.470.nd N 0.000
Ciclev10020072m.g Citrus clementina Ciclev10020072m.g N 0.000
Cla007135 Citrullus lanatus Cla007135 N 0.000
Cucsa.362140 Cucumis sativus Cucsa.362140 N 0.000
Eucgr.A00109 Eucalyptus grandis Eucgr.A00109 N 0.000
evm.TU.supercontig_9.323 Carica papaya evm.TU.supercontig_9.323 N 0.000
GLYMA13G42100 Glycine max GLYMA13G42100 N 0.000
GLYMA15G03290 Glycine max GLYMA15G03290 N 0.000
Gorai.011G140100 Gossypium raimondii Gorai.011G140100 N 0.000
Gorai.011G140300 Gossypium raimondii Gorai.011G140300 N 0.000
GSMUA_Achr6G21350_001 Musa acuminata GSMUA_Achr6G21350_001 N 0.000
GSMUA_Achr9G02380_001 Musa acuminata GSMUA_Achr9G02380_001 N 0.000
mgf025327m Mimulus guttatus mgf025327m N 0.000
MTR_2g099110 Medicago truncatula MTR_2g099110 N 0.000
orange1.1g047247m.g Citrus sinensis orange1.1g047247m.g N 0.000
PGSC0003DMG400014615 Solanum tuberosum PGSC0003DMG400014615 N 0.000
PK11022.1 Cannabis sativa PK11022.1 N 0.000
Pm007259 Prunus mume Pm007259 N 0.000
POPTR_0007s01650 Populus trichocarpa POPTR_0007s01650 N 0.000
POPTR_0017s05450 Populus trichocarpa POPTR_0017s05450 N 0.000
PRUPE_ppa1027119mg Prunus persica PRUPE_ppa1027119mg N 0.000
SapurV1A.0485s0200 Salix purpurea SapurV1A.0485s0200 N 0.000
SapurV1A.0791s0060 Salix purpurea SapurV1A.0791s0060 N 0.000
SapurV1A.0865s0070 Salix purpurea SapurV1A.0865s0070 N 0.000
SapurV1A.1272s0060 Salix purpurea SapurV1A.1272s0060 N 0.000
SapurV1A.1357s0040 Salix purpurea SapurV1A.1357s0040 N 0.000
Solyc08g014030.1 Solanum lycopersicum Solyc08g014030.1 N 0.000
TCM_019978 Theobroma cacao TCM_019978 N 0.000
VIT_00s0226g00070 Vitis vinifera VIT_00s0226g00070 N 0.000