AMTR_s00017p00086440 (Amborella trichopoda)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AMTR_s00017p00086440 T080671_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.774 0.929
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.774 0.929
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN08554 C2H2 ZF 390 412
ERN08554 C2H2 ZF 413 438

Links

Other C2H2 ZF family TFs
Other Amborella trichopoda TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL000826 Aedes aegypti AAEL000826 N 0.000
AALB009100 Anopheles albimanus AALB009100 N 0.000
AATE013995 Anopheles atroparvus AATE013995 N 0.000
ACEP12019 Atta cephalotes ACEP12019 N 0.000
ACOM037336 Anopheles coluzzii ACOM037336 N 0.000
ACYPI53104 Acyrthosiphon pisum ACYPI53104 N 0.000
ADAC004556 Anopheles darlingi ADAC004556 N 0.000
AGAP002993 Anopheles gambiae AGAP002993 N 0.000
AMEC003748 Anopheles melas AMEC003748 N 0.000
AMEM008468 Anopheles merus AMEM008468 N 0.000
ASIS014267 Anopheles sinensis ASIS014267 N 0.000
ASTEI03270 Anopheles stephensi ASTEI03270 N 0.000
BGIBMGA002168 Bombyx mori BGIBMGA002168 N 0.000
Cflo_05366--XP_001120155.1_APIME Camponotus floridanus Cflo_05366--XP_001120155.1_APIME N 0.000
CG11966 Drosophila melanogaster FBgn0037645 N 0.000
CLEC004985 Cimex lectularius CLEC004985 N 0.000
CPIJ019621 Culex quinquefasciatus CPIJ019621 N 0.000
CpipJ_CPIJ019621 Culex pipiens CpipJ_CPIJ019621 N 0.000
DAPPUDRAFT_196639 Daphnia pulex DAPPUDRAFT_196639 N 0.000
GA11300 Drosophila pseudoobscura FBgn0071354 N 0.000
GB48806 Apis mellifera GB48806 N 0.000
GE24811 Drosophila yakuba FBgn0241912 N 0.000
GF17275 Drosophila ananassae FBgn0094293 N 0.000
GG17407 Drosophila erecta FBgn0109633 N 0.000
GH18583 Drosophila grimshawi FBgn0126050 N 0.000
GI24513 Drosophila mojavensis FBgn0147235 N 0.000
GJ22686 Drosophila virilis FBgn0209790 N 0.000
GK11210 Drosophila willistoni FBgn0213221 N 0.000
GL21645 Drosophila persimilis FBgn0159238 N 0.000
GM26297 Drosophila sechellia FBgn0181151 N 0.000
HHAL008764-PA Halyomorpha halys HHAL008764-PA N 0.000
HMEL015339 Heliconius melpomene HMEL015339 N 0.000
KGM_06311 Danaus plexippus KGM_06311 N 0.000
LCUP004423 Lucilia cuprina LCUP004423 N 0.000
LDEC005984 Leptinotarsa decemlineata LDEC005984 N 0.000
MCINX001754 Melitaea cinxia MCINX001754 N 0.000
MDOA010621 Musca domestica MDOA010621 N 0.000
NV13471 Nasonia vitripennis NV13471 N 0.000
PHUM221070 Pediculus humanus PHUM221070 N 0.000
PPAI000190 Phlebotomus papatasi PPAI000190 N 0.000
SINV11338 Solenopsis invicta SINV11338 N 0.000
TC003707 Tribolium castaneum TC003707 N 0.000