snai2 (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000040046 T090907_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.803 0.939
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.803 0.939
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.803 0.939
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.803 0.939
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.803 0.939
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.803 0.939
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.803 0.939
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.803 0.939
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.803 0.939
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.803 0.939
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.803 0.939
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.803 0.939
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.799 0.930
wor
M03664_2.00 		Drosophila melanogaster
GYRACAGGTGYAH
DTRCACCTGTYRC		 SELEX
Nitta et al.(2015)
wor_1 		0.757 0.781
wor
M03665_2.00 		Drosophila melanogaster
DTRCACCTGTYGY
RCRACAGGTGYAH		 SELEX
Nitta et al.(2015)
wor_2 		0.757 0.781
wor
M06051_2.00 		Drosophila melanogaster
CACCTGY
RCAGGTG		 B1H
Zhu et al.(2011)
wor_SANGER_2.5_FBgn0001983 		0.757 0.781
wor
M06052_2.00 		Drosophila melanogaster
VCACCTGY
RCAGGTGB		 B1H
Zhu et al.(2011)
wor_SOLEXA_2.5_FBgn0001983 		0.757 0.781
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000058570 C2H2 ZF 117 139
ENSDARP00000058570 C2H2 ZF 148 170
ENSDARP00000058570 C2H2 ZF 174 196
ENSDARP00000058570 C2H2 ZF 202 224
ENSDARP00000058570 C2H2 ZF 230 251

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29851.m002498 Ricinus communis 29851.m002498 I
cassava29880.valid.m1 Manihot esculenta cassava29880.valid.m1 I
Ca_13671 Cicer arietinum Ca_13671 N
Ca_14825 Cicer arietinum Ca_14825 N
chr2.CM0262.200.nc Lotus japonicus chr2.CM0262.200.nc I
chr2.CM0308.470.nd Lotus japonicus chr2.CM0308.470.nd I
chr3.LjT23H01.130.nc Lotus japonicus chr3.LjT23H01.130.nc N
Cla010445 Citrullus lanatus Cla010445 I
gene31955-v1.0-hybrid Fragaria vesca gene31955-v1.0-hybrid I
GLYMA07G21160 Glycine max GLYMA07G21160 I
GLYMA11G13210 Glycine max GLYMA11G13210 N
GLYMA12G05250 Glycine max GLYMA12G05250 N
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I
Lus10012041.g Linum usitatissimum Lus10012041.g N
MDP0000238744 Malus domestica MDP0000238744 N
MDP0000555456 Malus domestica MDP0000555456 N
MTR_1g034210 Medicago truncatula MTR_1g034210 N
MTR_1g034240 Medicago truncatula MTR_1g034240 N
MTR_4g068320 Medicago truncatula MTR_4g068320 N
PK10791.1 Cannabis sativa PK10791.1 I
Pm021537 Prunus mume Pm021537 N
POPTR_0004s15400 Populus trichocarpa POPTR_0004s15400 I
PRUPE_ppa006275mg Prunus persica PRUPE_ppa006275mg I
TCM_006971 Theobroma cacao TCM_006971 I