gli2b (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000007692 T112322_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.797 0.965
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.797 0.965
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.797 0.965
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.797 0.965
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.797 0.965
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.797 0.965
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.779 0.922
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.779 0.922
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.779 0.922
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.779 0.922
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.779 0.922
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.779 0.922
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.779 0.922
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.779 0.922
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.779 0.922
Gli1
M01023_2.00 		Mus musculus
NGACCACCHN
NDGGTGGTCN		 PBM
Peterson et al.(2012)
Gli1 		0.766 0.861
GLI1
M02643_2.00 		Homo sapiens
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI1 		0.766 0.861
Gli1
M08976_2.00 		Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY		 Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C 		0.766 0.861
GLI1
M10176_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q2 		0.766 0.861
GLI1
M10177_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3_01 		0.766 0.861
GLI1
M10178_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3 		0.766 0.861
GLI1
M10179_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI_Q6 		0.766 0.861
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000019088 C2H2 ZF 498 523
ENSTRUP00000019088 C2H2 ZF 531 558
ENSTRUP00000019088 C2H2 ZF 564 588
ENSTRUP00000019088 C2H2 ZF 594 619
ENSTRUP00000019088 C2H2 ZF 625 650
ENSTRUP00000019089 C2H2 ZF 453 478
ENSTRUP00000019089 C2H2 ZF 486 513
ENSTRUP00000019089 C2H2 ZF 519 543
ENSTRUP00000019089 C2H2 ZF 549 574
ENSTRUP00000019089 C2H2 ZF 580 605
ENSTRUP00000019090 C2H2 ZF 452 477
ENSTRUP00000019090 C2H2 ZF 485 512
ENSTRUP00000019090 C2H2 ZF 518 542
ENSTRUP00000019090 C2H2 ZF 548 573
ENSTRUP00000019090 C2H2 ZF 579 604
ENSTRUP00000019091 C2H2 ZF 379 404
ENSTRUP00000019091 C2H2 ZF 412 439
ENSTRUP00000019091 C2H2 ZF 445 469
ENSTRUP00000019091 C2H2 ZF 475 500
ENSTRUP00000019091 C2H2 ZF 506 531
ENSTRUP00000019092 C2H2 ZF 375 400
ENSTRUP00000019092 C2H2 ZF 408 435
ENSTRUP00000019092 C2H2 ZF 441 465
ENSTRUP00000019092 C2H2 ZF 471 496
ENSTRUP00000019092 C2H2 ZF 502 527
ENSTRUP00000019093 C2H2 ZF 307 332
ENSTRUP00000019093 C2H2 ZF 340 367
ENSTRUP00000019093 C2H2 ZF 373 397
ENSTRUP00000019093 C2H2 ZF 403 428
ENSTRUP00000019093 C2H2 ZF 434 459
ENSTRUP00000019094 C2H2 ZF 307 332
ENSTRUP00000019094 C2H2 ZF 340 367
ENSTRUP00000019094 C2H2 ZF 373 397
ENSTRUP00000019094 C2H2 ZF 403 428
ENSTRUP00000019094 C2H2 ZF 434 459

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_040540 Albugo laibachii ALNC14_040540 N 0.000
ALNC14_040550 Albugo laibachii ALNC14_040550 N 0.000
ALNC14_040560 Albugo laibachii ALNC14_040560 N 0.000
ALNC14_040570 Albugo laibachii ALNC14_040570 N 0.000
ALNC14_040580 Albugo laibachii ALNC14_040580 N 0.000
ALNC14_040590 Albugo laibachii ALNC14_040590 N 0.000
ALNC14_040600 Albugo laibachii ALNC14_040600 N 0.000
ALNC14_040610 Albugo laibachii ALNC14_040610 N 0.000
ALNC14_040620 Albugo laibachii ALNC14_040620 N 0.000
ALNC14_040630 Albugo laibachii ALNC14_040630 N 0.000
ALNC14_040640 Albugo laibachii ALNC14_040640 N 0.000
ALNC14_040650 Albugo laibachii ALNC14_040650 N 0.000
ALNC14_040660 Albugo laibachii ALNC14_040660 N 0.000
ALNC14_040670 Albugo laibachii ALNC14_040670 N 0.000
ALNC14_040680 Albugo laibachii ALNC14_040680 N 0.000
ALNC14_040690 Albugo laibachii ALNC14_040690 N 0.000
ALNC14_040700 Albugo laibachii ALNC14_040700 N 0.000
ALNC14_040710 Albugo laibachii ALNC14_040710 N 0.000
ALNC14_040720 Albugo laibachii ALNC14_040720 N 0.000
ALNC14_040730 Albugo laibachii ALNC14_040730 N 0.000
ALNC14_040740 Albugo laibachii ALNC14_040740 N 0.000
ALNC14_040750 Albugo laibachii ALNC14_040750 N 0.000
ALNC14_040760 Albugo laibachii ALNC14_040760 N 0.000
ALNC14_040770 Albugo laibachii ALNC14_040770 N 0.000
ALNC14_040780 Albugo laibachii ALNC14_040780 N 0.000
ALNC14_040790 Albugo laibachii ALNC14_040790 N 0.000
ALNC14_040800 Albugo laibachii ALNC14_040800 N 0.000
ALNC14_040810 Albugo laibachii ALNC14_040810 N 0.000
ALNC14_040820 Albugo laibachii ALNC14_040820 N 0.000
ALNC14_040830 Albugo laibachii ALNC14_040830 N 0.000
ALNC14_040840 Albugo laibachii ALNC14_040840 N 0.000
ALNC14_066630 Albugo laibachii ALNC14_066630 N 0.000
ALNC14_090760 Albugo laibachii ALNC14_090760 N 0.000
ALNC14_122900 Albugo laibachii ALNC14_122900 N 0.000
Carubv10014950m.g Capsella rubella Carubv10014950m.g N 0.000
estExt_fgenesh1_kg.C_10721 Phytophthora capsici estExt_fgenesh1_kg.C_10721 N 0.000
estExt_fgenesh1_kg.C_21048 Phytophthora capsici estExt_fgenesh1_kg.C_21048 N 0.000
estExt_fgenesh1_kg.C_21051 Phytophthora capsici estExt_fgenesh1_kg.C_21051 N 0.000
estExt_fgenesh1_pg.C_230105 Phytophthora capsici estExt_fgenesh1_pg.C_230105 N 0.000
e_gw.355.83.1 Branchiostoma floridae e_gw.355.83.1 N 0.000
e_gw.355.85.1 Branchiostoma floridae e_gw.355.85.1 N 0.000
F443_03190 Phytophthora parasitica F443_03190 N 0.000
F443_06409 Phytophthora parasitica F443_06409 N 0.000
F443_15811 Phytophthora parasitica F443_15811 N 0.000
F443_18702 Phytophthora parasitica F443_18702 N 0.000
F443_18703 Phytophthora parasitica F443_18703 N 0.000
fgenesh-pir_contig_580-abinit-gene-0.31 Pythium irregulare fgenesh-pir_contig_580-abinit-gene-0.31 N 0.000
fgenesh_scip_prom.28083.4437 Phytophthora lateralis fgenesh_scip_prom.28083.4437 N 0.000
fgenesh_scip_prom.28083.4438 Phytophthora lateralis fgenesh_scip_prom.28083.4438 N 0.000
fgenesh_scip_prom.28083.520 Phytophthora lateralis fgenesh_scip_prom.28083.520 N 0.000
fgenesh_scip_prom.46568.1669 Phytophthora kernoviae fgenesh_scip_prom.46568.1669 N 0.000
fgenesh_scip_prom.46568.3588 Phytophthora kernoviae fgenesh_scip_prom.46568.3588 N 0.000
fgenesh_scip_prom.46568.7094 Phytophthora kernoviae fgenesh_scip_prom.46568.7094 N 0.000
fgenesh_scip_prom.46568.8092 Phytophthora kernoviae fgenesh_scip_prom.46568.8092 N 0.000
fgenesh_scip_prom.46568.8093 Phytophthora kernoviae fgenesh_scip_prom.46568.8093 N 0.000
HpaG802951 Hyaloperonospora arabidopsidis HpaG802951 N 0.000
HpaG802952 Hyaloperonospora arabidopsidis HpaG802952 N 0.000
HpaG808860 Hyaloperonospora arabidopsidis HpaG808860 N 0.000
HpaG810973 Hyaloperonospora arabidopsidis HpaG810973 N 0.000
maker-pag1_scaffold_1127-snap-gene-0.1 Pythium aphanidermatum maker-pag1_scaffold_1127-snap-gene-0.1 I 0.000
maker-pag1_scaffold_183-snap-gene-0.28 Pythium aphanidermatum maker-pag1_scaffold_183-snap-gene-0.28 N 0.000
maker-pag1_scaffold_287-snap-gene-0.16 Pythium aphanidermatum maker-pag1_scaffold_287-snap-gene-0.16 N 0.000
maker-pag1_scaffold_440-fgenesh-gene-0.4 Pythium aphanidermatum maker-pag1_scaffold_440-fgenesh-gene-0.4 N 0.000
maker-pag1_scaffold_66-snap-gene-0.49 Pythium aphanidermatum maker-pag1_scaffold_66-snap-gene-0.49 N 0.000
maker-par_contig_1213-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_1213-fgenesh-gene-0.0 N 0.000
maker-par_contig_1213-fgenesh-gene-0.2 Pythium arrhenomanes maker-par_contig_1213-fgenesh-gene-0.2 N 0.000
maker-par_contig_6535-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_6535-fgenesh-gene-0.0 N 0.000
maker-par_contig_654-snap-gene-0.10 Pythium arrhenomanes maker-par_contig_654-snap-gene-0.10 N 0.000
maker-pir_contig_320-snap-gene-0.13 Pythium irregulare maker-pir_contig_320-snap-gene-0.13 N 0.000
maker-pir_contig_551-fgenesh-gene-0.4 Pythium irregulare maker-pir_contig_551-fgenesh-gene-0.4 N 0.000
maker-pir_contig_698-fgenesh-gene-0.1 Pythium irregulare maker-pir_contig_698-fgenesh-gene-0.1 N 0.000
maker-pir_contig_85-snap-gene-0.26 Pythium irregulare maker-pir_contig_85-snap-gene-0.26 N 0.000
maker-piw_contig_207-snap-gene-0.13 Pythium iwayamai maker-piw_contig_207-snap-gene-0.13 N 0.000
maker-piw_contig_3132-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_3132-fgenesh-gene-0.1 N 0.000
maker-pve_contig_402-snap-gene-0.22 Pythium vexans maker-pve_contig_402-snap-gene-0.22 N 0.000
maker-pve_contig_635-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_635-fgenesh-gene-0.0 N 0.000
maker-pve_contig_642-fgenesh-gene-0.1 Pythium vexans maker-pve_contig_642-fgenesh-gene-0.1 N 0.000
maker-pve_contig_642-fgenesh-gene-0.5 Pythium vexans maker-pve_contig_642-fgenesh-gene-0.5 N 0.000
maker-pve_contig_835-fgenesh-gene-0.1 Pythium vexans maker-pve_contig_835-fgenesh-gene-0.1 N 0.000
Phyra73275 Phytophthora ramorum Phyra73275 N 0.000
Phyra80975 Phytophthora ramorum Phyra80975 N 0.000
Phyra84925 Phytophthora ramorum Phyra84925 N 0.000
Phyra95869 Phytophthora ramorum Phyra95869 N 0.000
Physo129725 Phytophthora sojae Physo129725 N 0.000
Physo129726 Phytophthora sojae Physo129726 N 0.000
Physo131272 Phytophthora sojae Physo131272 N 0.000
Physo134017 Phytophthora sojae Physo134017 N 0.000
Physo134018 Phytophthora sojae Physo134018 N 0.000
Physo144764 Phytophthora sojae Physo144764 N 0.000
PITG_05353 Phytophthora infestans PITG_05353 N 0.000
PITG_11760 Phytophthora infestans PITG_11760 N 0.000
PITG_14513 Phytophthora infestans PITG_14513 N 0.000
PITG_14514 Phytophthora infestans PITG_14514 N 0.000
PITG_20646 Phytophthora infestans PITG_20646 N 0.000
PITG_20647 Phytophthora infestans PITG_20647 N 0.000
PITG_22459 Phytophthora infestans PITG_22459 N 0.000
PYU1_G003405 Pythium ultimum PYU1_G003405 N 0.000
PYU1_G007450 Pythium ultimum PYU1_G007450 N 0.000
PYU1_G013874 Pythium ultimum PYU1_G013874 N 0.000
PYU1_G013875 Pythium ultimum PYU1_G013875 N 0.000
snap-par_contig_1252-abinit-gene-0.18 Pythium arrhenomanes snap-par_contig_1252-abinit-gene-0.18 I 0.000
snap_masked-pve_contig_472-abinit-gene-0.36 Pythium vexans snap_masked-pve_contig_472-abinit-gene-0.36 N 0.000
SPRG_01018 Saprolegnia parasitica SPRG_01018 N 0.000
SPRG_04538 Saprolegnia parasitica SPRG_04538 N 0.000
SPRG_09686 Saprolegnia parasitica SPRG_09686 N 0.000
YQE_02436 Dendroctonus ponderosae YQE_02436 I 0.000