CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OB09G18760 *(Oryza brachyantha)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	OB09G18760	T124601_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
SGR5 M06805_2.00	Arabidopsis thaliana	WTTTTGTCTTWTHYD	HRDAWAAGACAAAAW	Dap-seq OMalley et al.(2016) SGR5_col_a	0.812	0.930
SGR5 M06806_2.00	Arabidopsis thaliana	WTTTGTCTYWWHBNN	NNVDWWRAGACAAAW	Dap-seq OMalley et al.(2016) SGR5_colamp_a	0.812	0.930
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OB09G18760.1	C2H2 ZF	141	162	WVCARCAKGYAVQSDYKAHLKT
OB09G18760.1	C2H2 ZF	162	188	TCGTRGHSCDCGRVFSRVESFIEHQDT

Links
Other C2H2 ZF family TFs
Other *Oryza brachyantha* TFs