SINV16941 (Solenopsis invicta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 SINV16941 T128825_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLIS1
M02911_2.00 		Homo sapiens
MGACCCCCCACGWHGN
NCDWCGTGGGGGGTCK		 SELEX
Jolma et al.(2013)
GLIS1_1 		0.793 0.868
GLIS1
M04564_2.00 		Homo sapiens
BMCCCCCCRCVDHSH
DSDHBGYGGGGGGKV		 SELEX
Yin et al.(2017)
GLIS1_eDBD_HT-SELEX 		0.793 0.868
GLIS1
M08345_2.00 		Homo sapiens
SNSYSYRGGRGGBV
BVCCYCCYRSRSNS		 ChIP-seq
Schmitges et al.(2016)
Q8NBF1.MEME 		0.793 0.868
GLIS1
M04565_2.00 		Homo sapiens
DCWHNGTGGGGGGTV
BACCCCCCACNDWGH		 SELEX
Yin et al.(2017)
GLIS1_eDBD_Methyl-HT-SELEX 		0.793 0.868
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SINV16941-PA C2H2 ZF 935 961
SINV16941-PA C2H2 ZF 968 991
SINV16941-PA C2H2 ZF 997 1021
SINV16941-PA C2H2 ZF 1027 1051

Links

Other C2H2 ZF family TFs
Other Solenopsis invicta TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_062100 Albugo laibachii ALNC14_062100 N
estExt_fgenesh1_pm.C_70287 Phytophthora capsici estExt_fgenesh1_pm.C_70287 N
F443_13662 Phytophthora parasitica F443_13662 N
fgenesh_scip_prom.28083.8529 Phytophthora lateralis fgenesh_scip_prom.28083.8529 N
fgenesh_scip_prom.46568.7146 Phytophthora kernoviae fgenesh_scip_prom.46568.7146 N
HpaG808215 Hyaloperonospora arabidopsidis HpaG808215 N
maker-pag1_scaffold_204-fgenesh-gene-0.5 Pythium aphanidermatum maker-pag1_scaffold_204-fgenesh-gene-0.5 N
maker-par_contig_10-snap-gene-0.19 Pythium arrhenomanes maker-par_contig_10-snap-gene-0.19 N
maker-pir_contig_961-fgenesh-gene-0.2 Pythium irregulare maker-pir_contig_961-fgenesh-gene-0.2 N
maker-piw_contig_1376-fgenesh-gene-0.0 Pythium iwayamai maker-piw_contig_1376-fgenesh-gene-0.0 N
maker-pve_contig_145-fgenesh-gene-0.2 Pythium vexans maker-pve_contig_145-fgenesh-gene-0.2 N
Phyra80113 Phytophthora ramorum Phyra80113 N
Physo140472 Phytophthora sojae Physo140472 N
PITG_09279 Phytophthora infestans PITG_09279 N
PYU1_G001315 Pythium ultimum PYU1_G001315 N
SPRG_05687 Saprolegnia parasitica SPRG_05687 N