Cmyd_10005916 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10005916 T134287_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF653
M08248_2.00 		Homo sapiens
NWTTHNYDHCYKCCGACWNHWAWD
HWTWDNWGTCGGMRGDHRNDAAWN		 ChIP-seq
Najafabadi et al.(2015b)
ZNF653 		0.811 0.965
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10005916 C2H2 ZF 355 380
Cmyd_10005916 C2H2 ZF 386 410
Cmyd_10005916 C2H2 ZF 416 438
Cmyd_10005916 C2H2 ZF 444 466
Cmyd_10005916 C2H2 ZF 474 497

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG017936.1 Alligator sinensis Alligator_sinensis_CCG017936.1 I 0.803
ENSACAG00000016965 Anolis carolinensis ENSACAG00000016965 I 0.815
ENSAMEG00000010478 Ailuropoda melanoleuca ENSAMEG00000010478 I 0.813
ENSAMXG00000005448 Astyanax mexicanus ENSAMXG00000005448 I 0.786
ENSCSAG00000006753 Chlorocebus sabaeus ENSCSAG00000006753 I 0.811
ENSMMUP00000027145 Macaca fascicularis ENSMMUP00000027145 I 0.803
ENSMPUG00000005002 Mustela putorius furo ENSMPUG00000005002 I 0.813
ENSNLEG00000012591 Nomascus leucogenys ENSNLEG00000012591 I 0.811
ENSOANG00000012102 Ornithorhynchus anatinus ENSOANG00000012102 I 0.827
ENSONIG00000008038 Oreochromis niloticus ENSONIG00000008038 I 0.784
ENSPANG00000016446 Papio anubis ENSPANG00000016446 I 0.811
ENSPFOG00000003530 Poecilia formosa ENSPFOG00000003530 I 0.784
ENSPPYG00000009584 Pongo abelii ENSPPYG00000009584 I 0.811
ENSSTOG00000003640 Ictidomys tridecemlineatus ENSSTOG00000003640 I 0.767
Myotis_brandtii_Znf653_10003855 Myotis brandtii Myotis_brandtii_Znf653_10003855 I 0.813
Ogr06398 Ophisaurus gracilis Ogr06398 I 0.815
Pvit_14576 Pogona vitticeps Pvit_14576 I 0.815
Zfp653 Mus musculus ENSMUSG00000038895 I 0.811
Zfp653 Rattus norvegicus ENSRNOG00000014065 I 0.811
znf653 Oryzias latipes ENSORLG00000016563 I 0.784
ZNF653 Macaca mulatta ENSMMUG00000020617 I 0.811
ZNF653 Myotis lucifugus ENSMLUG00000016337 I 0.813
ZNF653 Homo sapiens ENSG00000161914 D 0.811
ZNF653 Pan troglodytes ENSPTRG00000010507 I 0.811
ZNF653 Pteropus vampyrus ENSPVAG00000014895 I 0.813
ZNF653 Otolemur garnettii ENSOGAG00000007074 I 0.813
ZNF653 Sus scrofa ENSSSCG00000013616 I 0.813
ZNF653 Felis catus ENSFCAG00000004922 I 0.813
ZNF653 Tursiops truncatus ENSTTRG00000001794 I 0.813
znf653 Danio rerio ENSDARG00000093469 I 0.782
ZNF653 Cavia porcellus ENSCPOG00000010842 I 0.813
ZNF653 Callithrix jacchus ENSCJAG00000005551 I 0.811
ZNF653 Canis familiaris ENSCAFG00000031712 I 0.813
ZNF653 Bos taurus ENSBTAG00000014415 I 0.813