Cmyd_10017446 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10017446 T134453_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.756 0.904
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.756 0.904
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.756 0.904
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.756 0.904
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.756 0.904
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.756 0.904
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.756 0.904
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.756 0.904
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.756 0.904
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.756 0.904
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.756 0.904
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.756 0.904
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10017446 C2H2 ZF 118 140
Cmyd_10017446 C2H2 ZF 149 171
Cmyd_10017446 C2H2 ZF 175 197
Cmyd_10017446 C2H2 ZF 203 225
Cmyd_10017446 C2H2 ZF 231 252

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG017419.1 Alligator sinensis Alligator_sinensis_CCG017419.1 I
Brh_R000054 Buceros rhinoceros Brh_R000054 I
ENSAMXG00000000428 Astyanax mexicanus ENSAMXG00000000428 I
ENSAPLG00000001124 Anas platyrhynchos ENSAPLG00000001124 I
ENSCING00000007328 Ciona intestinalis ENSCING00000007328 N
ENSFALG00000010507 Ficedula albicollis ENSFALG00000010507 I
ENSMEUG00000010628 Macropus eugenii ENSMEUG00000010628 I
ENSMGAG00000011091 Meleagris gallopavo ENSMGAG00000011091 I
ENSONIG00000000077 Oreochromis niloticus ENSONIG00000000077 I
ENSPFOG00000017488 Poecilia formosa ENSPFOG00000017488 I
ENSPSIG00000012000 Pelodiscus sinensis ENSPSIG00000012000 I
ENSSHAG00000013391 Sarcophilus harrisii ENSSHAG00000013391 I
ENSTGUG00000007755 Taeniopygia guttata ENSTGUG00000007755 I
ENSXMAG00000017496 Xiphophorus maculatus ENSXMAG00000017496 I
MYF5 Gallus gallus ENSGALG00000028091 I
MYF5 Monodelphis domestica ENSMODG00000020478 I
MYF5 Ornithorhynchus anatinus ENSOANG00000004853 I
MYF5 Otolemur garnettii ENSOGAG00000001039 I
myf5 Oryzias latipes ENSORLG00000016257 I
myf5 Danio rerio ENSDARG00000007277 I