Gfo_R006792 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R006792 T135748_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB18
M02916_2.00 		Homo sapiens
VMACATCTGGAWN
NWTCCAGATGTKB		 SELEX
Jolma et al.(2013)
ZNF238_1 		0.759 0.921
ZBTB18
M02917_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Jolma et al.(2013)
ZNF238_2 		0.759 0.921
ZBTB18
M04585_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_HT-SELEX 		0.759 0.921
ZBTB18
M08350_2.00 		Homo sapiens
MRCAKCTGG
CCAGMTGYK		 ChIP-seq
Schmitges et al.(2016)
Q99592_2-4.RCADE 		0.759 0.921
ZBTB18
M08928_2.00 		Homo sapiens
VMRCAKCTGGV
BCCAGMTGYKB		 Misc
Kulakovskiy et al.(2013)
ZBT18_HUMAN.H11MO.0.C 		0.759 0.921
ZBTB18
M10282_2.00 		Homo sapiens
NNMACATCTGGM
KCCAGATGTKNN		 Transfac
Matys et al.(2006)
V$RP58_01 		0.759 0.921
ZBTB18
M10283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RP58_Q3 		0.759 0.921
ZBTB18
M04586_2.00 		Homo sapiens
NMACATCTGBHNN
NNDVCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_Methyl-HT-SELEX 		0.759 0.921
ZBTB18
M08257_2.00 		Homo sapiens
NMGCAGCTGCKB
VMGCAGCTGCKN		 ChIP-seq
Najafabadi et al.(2015b)
ZNF238 		0.759 0.901
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R006792 C2H2 ZF 347 369
Gfo_R006792 C2H2 ZF 388 409
Gfo_R006792 C2H2 ZF 415 437
Gfo_R006792 C2H2 ZF 445 466

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAH70718 Xenopus laevis AAH70718 I 0.759
Aan_R007004 Calypte anna Aan_R007004 I 0.759
Aan_R011644 Calypte anna Aan_R011644 I 0.827
Afo_R000236 Aptenodytes forsteri Afo_R000236 I 0.759
Afo_R004692 Aptenodytes forsteri Afo_R004692 I 0.827
Alligator_sinensis_CCG020881.1 Alligator sinensis Alligator_sinensis_CCG020881.1 I 0.772
Brh_R000160 Buceros rhinoceros Brh_R000160 I 0.759
Brh_R011012 Buceros rhinoceros Brh_R011012 I 0.827
Cmyd_10012301 Chelonia mydas Cmyd_10012301 I 0.825
Cmyd_10016351 Chelonia mydas Cmyd_10016351 I 0.759
ENSAMEG00000019750 Ailuropoda melanoleuca ENSAMEG00000019750 I 0.759
ENSAPLG00000002367 Anas platyrhynchos ENSAPLG00000002367 I 0.759
ENSBTAP00000000497-D1 Bos grunniens ENSBTAP00000000497-D1 I 0.759
ENSCPOG00000023254 Cavia porcellus ENSCPOG00000023254 I 0.759
ENSDORG00000000569 Dipodomys ordii ENSDORG00000000569 I 0.759
ENSFALG00000011473 Ficedula albicollis ENSFALG00000011473 I 0.759
ENSFALG00000014898 Ficedula albicollis ENSFALG00000014898 I 0.827
ENSFCAG00000026731 Felis catus ENSFCAG00000026731 I 0.759
ENSGMOG00000018718 Gadus morhua ENSGMOG00000018718 I 0.757
ENSLACG00000009889 Latimeria chalumnae ENSLACG00000009889 I 0.759
ENSLOCG00000017349 Lepisosteus oculatus ENSLOCG00000017349 I 0.756
ENSMEUG00000009369 Macropus eugenii ENSMEUG00000009369 I 0.759
ENSMPUG00000015734 Mustela putorius furo ENSMPUG00000015734 I 0.759
ENSONIG00000000862 Oreochromis niloticus ENSONIG00000000862 I 0.792
ENSP00000351539 Macaca fascicularis ENSP00000351539 I 0.759
ENSPANG00000021934 Papio anubis ENSPANG00000021934 I 0.759
ENSPFOG00000022080 Poecilia formosa ENSPFOG00000022080 I 0.795
ENSPPYG00000000059 Pongo abelii ENSPPYG00000000059 I 0.759
ENSPSIG00000000487 Pelodiscus sinensis ENSPSIG00000000487 I 0.824
ENSSHAG00000008534 Sarcophilus harrisii ENSSHAG00000008534 I 0.757
ENSSHAG00000008659 Sarcophilus harrisii ENSSHAG00000008659 I 0.759
ENSSSCG00000030070 Sus scrofa ENSSSCG00000030070 I 0.793
ENSSTOG00000004290 Ictidomys tridecemlineatus ENSSTOG00000004290 I 0.759
ENSTSYG00000004607 Tarsius syrichta ENSTSYG00000004607 I 0.759
ENSXMAG00000018241 Xiphophorus maculatus ENSXMAG00000018241 I 0.795
Gfo_R011040 Geospiza fortis Gfo_R011040 I 0.759
Myotis_brandtii_ZNF238_10003031 Myotis brandtii Myotis_brandtii_ZNF238_10003031 I 0.759
Ogr11588 Ophisaurus gracilis Ogr11588 I 0.769
Pvit_01078 Pogona vitticeps Pvit_01078 I 0.759
ZBTB18 Taeniopygia guttata ENSTGUG00000008247 I 0.759
zbtb18 Tetraodon nigroviridis ENSTNIG00000000430 I 0.795
zbtb18 Takifugu rubripes ENSTRUG00000000952 I 0.795
ZBTB18 Tursiops truncatus ENSTTRG00000000615 I 0.759
ZBTB18 Otolemur garnettii ENSOGAG00000013580 I 0.759
ZBTB18 Sorex araneus ENSSARG00000002984 I 0.759
ZBTB18 Meleagris gallopavo ENSMGAG00000011476 I 0.759
ZBTB18 Anolis carolinensis ENSACAG00000004296 I 0.759
ZBTB18 Bos taurus ENSBTAG00000000385 I 0.759
ZBTB18 Callithrix jacchus ENSCJAG00000017087 I 0.759
ZBTB18 Dasypus novemcinctus ENSDNOG00000009334 I 0.759
ZBTB18 Equus caballus ENSECAG00000018829 I 0.759
ZBTB18 Erinaceus europaeus ENSEEUG00000014181 I 0.759
ZBTB18 Homo sapiens ENSG00000179456 D 0.759
zbtb18 Gasterosteus aculeatus ENSGACG00000010518 I 0.795
ZBTB18 Gallus gallus ENSGALG00000010705 I 0.759
ZBTB18 Gorilla gorilla ENSGGOG00000028442 I 0.759
ZBTB18 Loxodonta africana ENSLAFG00000002879 I 0.759
ZBTB18 Pteropus vampyrus ENSPVAG00000011441 I 0.759
zbtb18 Xenopus tropicalis XB-GENE-1003542 I 0.759
ZBTB18 Microcebus murinus ENSMICG00000007600 I 0.759
ZBTB18 Myotis lucifugus ENSMLUG00000011285 I 0.759
ZBTB18 Macaca mulatta ENSMMUG00000015664 I 0.759
ZBTB18 Monodelphis domestica ENSMODG00000006570 I 0.759
Zbtb18 Mus musculus ENSMUSG00000063659 I 0.759
ZBTB18 Ornithorhynchus anatinus ENSOANG00000010257 I 0.759
ZBTB18 Oryctolagus cuniculus ENSOCUG00000007968 I 0.759
zbtb18 Oryzias latipes ENSORLG00000004823 I 0.795
ZBTB18 Pan troglodytes ENSPTRG00000002175 I 0.759
zbtb18.L Xenopus laevis XB-GENE-1003548 I 0.759
ZBTB42 Anolis carolinensis ENSACAG00000011451 I 0.759
ZBTB42 Monodelphis domestica ENSMODG00000013701 I 0.757
ZBTB42 Meleagris gallopavo ENSMGAG00000015389 I 0.772
ZBTB42 Gallus gallus ENSGALG00000023025 I 0.772
Zfp238 Rattus norvegicus ENSRNOG00000004423 I 0.759
znf238.2 Xenopus tropicalis XB-GENE-1219066 I 0.757
znf238.2.L Xenopus laevis XB-GENE-1219070 I 0.812