Gfo_R010168 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R010168 T135808_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLIS3
M02880_2.00 		Homo sapiens
CTTYGTGGGGGGTM
KACCCCCCACRAAG		 SELEX
Jolma et al.(2013)
GLIS3_1 		0.767 0.921
GLIS3
M10169_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF515_01 		0.767 0.921
GLIS3
M10170_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF515_Q6_01 		0.767 0.921
GLIS3
M10171_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF515_Q6 		0.767 0.921
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R010168 C2H2 ZF 316 341
Gfo_R010168 C2H2 ZF 350 377
Gfo_R010168 C2H2 ZF 384 407
Gfo_R010168 C2H2 ZF 413 437
Gfo_R010168 C2H2 ZF 443 467

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R004053 Calypte anna Aan_R004053 I 0.825
Aan_R004381 Calypte anna Aan_R004381 I 0.767
Afo_R001041 Aptenodytes forsteri Afo_R001041 I 0.825
Afo_R016063 Aptenodytes forsteri Afo_R016063 I 0.767
Brh_R013214 Buceros rhinoceros Brh_R013214 I 0.827
CapteG111854 Capitella teleta CapteG111854 N 0.801
ENSAMXG00000005278 Astyanax mexicanus ENSAMXG00000005278 I 0.766
ENSAPLG00000013972 Anas platyrhynchos ENSAPLG00000013972 I 0.825
ENSAPLG00000014844 Anas platyrhynchos ENSAPLG00000014844 I 0.767
ENSFALG00000011974 Ficedula albicollis ENSFALG00000011974 I 0.827
ENSGALG00000010721 Gallus gallus ENSGALG00000010721 I 0.825
ENSGMOG00000018511 Gadus morhua ENSGMOG00000018511 I 0.775
ENSLACG00000012147 Latimeria chalumnae ENSLACG00000012147 I 0.825
ENSLOCG00000003071 Lepisosteus oculatus ENSLOCG00000003071 I 0.779
ENSLOCG00000012972 Lepisosteus oculatus ENSLOCG00000012972 I 0.767
ENSMEUG00000005102 Macropus eugenii ENSMEUG00000005102 I 0.767
ENSMEUG00000009882 Macropus eugenii ENSMEUG00000009882 I 0.779
ENSMPUG00000005095 Mustela putorius furo ENSMPUG00000005095 I 0.767
ENSNLEG00000008824 Nomascus leucogenys ENSNLEG00000008824 I 0.767
ENSOANG00000014997 Ornithorhynchus anatinus ENSOANG00000014997 I 0.767
ENSOARG00000013378 Ovis aries ENSOARG00000013378 I 0.767
ENSORLG00000003872 Oryzias latipes ENSORLG00000003872 I 0.775
ENSP00000371398 Macaca fascicularis ENSP00000371398 I 0.767
ENSP00000384734-D2 Bos grunniens ENSP00000384734-D2 I 0.767
ENSPANG00000025157 Papio anubis ENSPANG00000025157 I 0.767
ENSPFOG00000017914 Poecilia formosa ENSPFOG00000017914 I 0.775
ENSPPYG00000019250 Pongo abelii ENSPPYG00000019250 I 0.758
ENSPSIG00000002846 Pelodiscus sinensis ENSPSIG00000002846 I 0.825
ENSPSIG00000005966 Pelodiscus sinensis ENSPSIG00000005966 I 0.767
ENSSTOG00000000302 Ictidomys tridecemlineatus ENSSTOG00000000302 I 0.767
ENSTNIG00000009052 Tetraodon nigroviridis ENSTNIG00000009052 N 0.785
ENSTRUG00000001198 Takifugu rubripes ENSTRUG00000001198 I 0.766
ENSTSYG00000000686 Tarsius syrichta ENSTSYG00000000686 I 0.767
ENSXMAG00000013077 Xiphophorus maculatus ENSXMAG00000013077 I 0.775
e_gw.471.22.1 Branchiostoma floridae e_gw.471.22.1 I 0.757
GLIS1 Tetraodon nigroviridis ENSTNIG00000010694 I 0.766
GLIS1 Gasterosteus aculeatus ENSGACG00000012109 I 0.775
GLIS1 Taeniopygia guttata ENSTGUG00000009294 I 0.827
GLIS1 Meleagris gallopavo ENSMGAG00000011303 I 0.825
GLIS1 Cavia porcellus ENSCPOG00000009497 I 0.769
glis1b Danio rerio ENSDARG00000027933 I 0.775
GLIS3 Vicugna pacos ENSVPAG00000005473 I 0.767
glis3 Xenopus tropicalis XB-GENE-984727 I 0.757
GLIS3 Equus caballus ENSECAG00000020544 I 0.767
GLIS3 Anolis carolinensis ENSACAG00000003374 I 0.767
GLIS3 Canis familiaris ENSCAFG00000031499 I 0.767
GLIS3 Callithrix jacchus ENSCJAG00000011083 I 0.767
GLIS3 Cavia porcellus ENSCPOG00000005523 I 0.767
GLIS3 Taeniopygia guttata ENSTGUG00000005266 I 0.764
GLIS3 Echinops telfairi ENSETEG00000015977 I 0.767
GLIS3 Homo sapiens ENSG00000107249 D 0.767
GLIS3 Gallus gallus ENSGALG00000010180 I 0.767
GLIS3 Monodelphis domestica ENSMODG00000015403 I 0.767
Glis3 Mus musculus ENSMUSG00000052942 I 0.767
GLIS3 Otolemur garnettii ENSOGAG00000007376 I 0.767
GLIS3 Procavia capensis ENSPCAG00000004139 I 0.758
GLIS3 Pteropus vampyrus ENSPVAG00000001839 I 0.767
Glis3 Rattus norvegicus ENSRNOG00000014768 I 0.767
gw.28.157.1 Branchiostoma floridae gw.28.157.1 I 0.757
LotgiG55425 Lottia gigantea LotgiG55425 N 0.784
Myotis_brandtii_GLIS3_10023567 Myotis brandtii Myotis_brandtii_GLIS3_10023567 I 0.767
Ocbimv22014778m.g Octopus bimaculoides Ocbimv22014778m.g I 0.801
Ogr17806 Ophisaurus gracilis Ogr17806 I 0.767
Pvit_10484 Pogona vitticeps Pvit_10484 I 0.767
Pvit_11533 Pogona vitticeps Pvit_11533 I 0.816
Sakowv30037345m.g Saccoglossus kowalevskii Sakowv30037345m.g I 0.761
SPU_018744 Strongylocentrotus purpuratus SPU_018744 I 0.761
Tal_R012308 Tyto alba Tal_R012308 I 0.827