cassava24483.valid.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava24483.valid.m1 T137844_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 0.956
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 0.956
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava24483.valid.m1 C2H2 ZF 359 381
cassava24483.valid.m1 C2H2 ZF 380 411

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CapteG179381 Capitella teleta CapteG179381 N 0.000
CGI_10022679 Crassostrea gigas CGI_10022679 N 0.000
Cmyd_10014849 Chelonia mydas Cmyd_10014849 N 0.000
ENSAMEG00000015014 Ailuropoda melanoleuca ENSAMEG00000015014 I 0.000
ENSAMXG00000004259 Astyanax mexicanus ENSAMXG00000004259 N 0.000
ENSGMOG00000002744 Gadus morhua ENSGMOG00000002744 N 0.000
ENSLAFG00000004212 Loxodonta africana ENSLAFG00000004212 N 0.000
ENSPMAG00000001124 Petromyzon marinus ENSPMAG00000001124 N 0.000
ENSSTOG00000016500 Ictidomys tridecemlineatus ENSSTOG00000016500 N 0.000
MYT1L Echinops telfairi ENSETEG00000015771 N 0.000
MYT1L Pteropus vampyrus ENSPVAG00000001625 N 0.000
MYT1L Tetraodon nigroviridis ENSTNIG00000008296 N 0.000
ST18 Microcebus murinus ENSMICG00000003705 N 0.000
ST18 Procavia capensis ENSPCAG00000014437 N 0.000
tetur15g00740 Tetranychus urticae tetur15g00740 N 0.000