Cagra.0604s0001 (Capsella grandiflora)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cagra.0604s0001 T142632_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G15740
M06810_2.00 		Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW		 Dap-seq
OMalley et al.(2016)
AT2G15740_col_a 		0.805 0.870
AT5G22990
M06821_2.00 		Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW		 Dap-seq
OMalley et al.(2016)
AT5G22990_col_a 		0.805 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0604s0001.1.p C2H2 ZF 266 288

Links

Other C2H2 ZF family TFs
Other Capsella grandiflora TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_02184 Capronia coronata A1O1_02184 N
A1O3_00595 Capronia epimyces A1O3_00595 N
A1O5_08469 Cladophialophora psammophila A1O5_08469 N
A1O7_08052 Cladophialophora yegresii A1O7_08052 N
BGHDH14_bgh03227 Blumeria graminis BGHDH14_bgh03227 N
CCM_02838 Cordyceps militaris CCM_02838 N
G647_07018 Cladophialophora carrionii G647_07018 N
HMPREF1120_02535 Exophiala dermatitidis HMPREF1120_02535 N
HMPREF1541_03614 Cyphellophora europaea HMPREF1541_03614 N
MPH_09912 Macrophomina phaseolina MPH_09912 N
Pc16g07900 Penicillium chrysogenum Pc16g07900 N
PCH_Pc16g07900 Penicillium rubens PCH_Pc16g07900 N
PDE_02813 Penicillium oxalicum PDE_02813 N
PDIP_21470 Penicillium digitatum PDIP_21470 N
PV04_08573 Capronia semiimmersa PV04_08573 N
PV05_01125 Exophiala xenobiotica PV05_01125 N
PV06_02454 Exophiala oligosperma PV06_02454 N
PV07_01287 Cladophialophora immunda PV07_01287 N
PV08_02650 Exophiala spinifera PV08_02650 N
PV10_04851 Exophiala mesophila PV10_04851 N
U727_00434000221 Penicillium solitum U727_00434000221 N
UCRNP2_4796 Neofusicoccum parvum UCRNP2_4796 N
VDAG_06193 Verticillium dahliae VDAG_06193 N
Z517_04798 Fonsecaea pedrosoi Z517_04798 N
Z519_05583 Cladophialophora bantiana Z519_05583 N