Carubv10028256m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10028256m.g T142751_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10028256m C2H2 ZF 33 55

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28345.m000111 Ricinus communis 28345.m000111 N 0.767
AMTR_s00009p00194700 Amborella trichopoda AMTR_s00009p00194700 N 0.824
AMTR_s00012p00258620 Amborella trichopoda AMTR_s00012p00258620 N 0.824
Aquca_003_00162 Aquilegia coerulea Aquca_003_00162 N 0.767
BGIOSGA025569 Oryza indica BGIOSGA025569 N 0.827
Bo7g065530 Brassica oleracea Bo7g065530 N 0.827
Bo9g059250 Brassica oleracea Bo9g059250 N 0.827
Bostr.3148s0115 Boechera stricta Bostr.3148s0115 N 0.827
Bra027500 Brassica rapa Bra027500 N 0.827
Bra033683 Brassica rapa Bra033683 N 0.827
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I 0.817
Cagra.19122s0001 Capsella grandiflora Cagra.19122s0001 N 0.827
cassava32634.m1 Manihot esculenta cassava32634.m1 N 0.817
cassava4410.m1 Manihot esculenta cassava4410.m1 N 0.767
chr1.CM0147.870.nc Lotus japonicus chr1.CM0147.870.nc I 0.779
Ciclev10006751m.g Citrus clementina Ciclev10006751m.g N 0.827
Ciclev10022375m.g Citrus clementina Ciclev10022375m.g N 0.814
Cla006093 Citrullus lanatus Cla006093 N 0.814
Cla008348 Citrullus lanatus Cla008348 N 0.817
Cla008944 Citrullus lanatus Cla008944 I 0.757
Cla021877 Citrullus lanatus Cla021877 N 0.827
Cucsa.016990 Cucumis sativus Cucsa.016990 N 0.814
Cucsa.117650 Cucumis sativus Cucsa.117650 N 0.817
Cucsa.321760 Cucumis sativus Cucsa.321760 I 0.757
Eucgr.H00184 Eucalyptus grandis Eucgr.H00184 N 0.827
evm.TU.supercontig_44.98 Carica papaya evm.TU.supercontig_44.98 N 0.827
F775_00917 Aegilops tauschii F775_00917 I 0.798
gene30215-v1.0-hybrid Fragaria vesca gene30215-v1.0-hybrid N 0.827
GLYMA07G16290 Glycine max GLYMA07G16290 I 0.769
GLYMA10G32810 Glycine max GLYMA10G32810 N 0.827
GLYMA12G06340 Glycine max GLYMA12G06340 N 0.817
GLYMA20G34840 Glycine max GLYMA20G34840 N 0.827
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N 0.767
Gorai.011G172000 Gossypium raimondii Gorai.011G172000 N 0.827
GRMZM2G000126 Zea mays GRMZM2G000126 I 0.757
GRMZM2G344974 Zea mays GRMZM2G344974 I 0.757
GRMZM2G409452 Zea mays GRMZM2G409452 I 0.817
GRMZM2G443109 Zea mays GRMZM2G443109 I 0.817
GSMUA_Achr11G02150_001 Musa acuminata GSMUA_Achr11G02150_001 N 0.808
GSMUA_Achr8G14360_001 Musa acuminata GSMUA_Achr8G14360_001 N 0.827
LPERR07G09750 Leersia perrieri LPERR07G09750 N 0.827
Lus10021213.g Linum usitatissimum Lus10021213.g I 0.817
Lus10022204.g Linum usitatissimum Lus10022204.g I 0.817
Lus10022206.g Linum usitatissimum Lus10022206.g I 0.757
MDP0000143134 Malus domestica MDP0000143134 N 0.827
mgf024356m Mimulus guttatus mgf024356m I 0.769
MTR_1g070250 Medicago truncatula MTR_1g070250 N 0.814
MTR_1g075430 Medicago truncatula MTR_1g075430 N 0.827
MTR_4g064873 Medicago truncatula MTR_4g064873 N 0.817
MTR_7g063220 Medicago truncatula MTR_7g063220 I 0.779
OB02G44430 Oryza brachyantha OB02G44430 I 0.757
OB07G18110 Oryza brachyantha OB07G18110 N 0.827
OBART07G11660 Oryza barthii OBART07G11660 N 0.827
OGLUM07G11160 Oryza glumaepatula OGLUM07G11160 N 0.827
OLONG_012182 Oryza longistaminata OLONG_012182 N 0.827
ONIVA07G09630 Oryza nivara ONIVA07G09630 N 0.827
ONIVA07G09640 Oryza nivara ONIVA07G09640 N 0.827
OPUNC07G10480 Oryza punctata OPUNC07G10480 N 0.827
orange1.1g037433m.g Citrus sinensis orange1.1g037433m.g N 0.827
orange1.1g044013m.g Citrus sinensis orange1.1g044013m.g N 0.814
ORGLA07G0099100 Oryza glaberrima ORGLA07G0099100 N 0.827
ORUFI07G11810 Oryza rufipogon ORUFI07G11810 N 0.827
OS07G0417400 Oryza sativa OS07G0417400 N 0.827
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I 0.757
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I 0.817
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I 0.817
PDK_20s1360411g002 Phoenix dactylifera PDK_20s1360411g002 N 0.814
PK22236.1 Cannabis sativa PK22236.1 N 0.814
Pm002649 Prunus mume Pm002649 N 0.779
Pm009419 Prunus mume Pm009419 N 0.827
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I 0.757
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I 0.769
PRUPE_ppa016491mg Prunus persica PRUPE_ppa016491mg N 0.827
PRUPE_ppa021945mg Prunus persica PRUPE_ppa021945mg N 0.827
PRUPE_ppb012667mg Prunus persica PRUPE_ppb012667mg N 0.769
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I 0.817
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I 0.817
Sb02g009930 Sorghum bicolor Sb02g009930 I 0.817
Sb04g037590 Sorghum bicolor Sb04g037590 I 0.757
scaffold_800693.1 Arabidopsis lyrata scaffold_800693.1 N 0.827
Si019563m.g Setaria italica Si019563m.g I 0.757
Si032478m.g Setaria italica Si032478m.g I 0.817
TCM_020819 Theobroma cacao TCM_020819 N 0.827
TCM_021876 Theobroma cacao TCM_021876 N 0.767
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I 0.817
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I 0.817
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I 0.817
TRIUR3_25222 Triticum urartu TRIUR3_25222 I 0.817
VIT_06s0004g05260 Vitis vinifera VIT_06s0004g05260 N 0.824