Ciclev10000850m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10000850m.g T142753_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.803 0.933
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.803 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10000850m C2H2 ZF 358 380
Ciclev10000850m C2H2 ZF 379 410

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30174.m008784 Ricinus communis 30174.m008784 N 0.000
Aquca_002_00029 Aquilegia coerulea Aquca_002_00029 N 0.000
Aquca_081_00025 Aquilegia coerulea Aquca_081_00025 N 0.000
BGIOSGA016880 Oryza indica BGIOSGA016880 N 0.000
Bo6g077030 Brassica oleracea Bo6g077030 N 0.000
Bo8g095200 Brassica oleracea Bo8g095200 N 0.000
Bostr.13158s0042 Boechera stricta Bostr.13158s0042 N 0.000
Bra003413 Brassica rapa Bra003413 N 0.000
Bra007536 Brassica rapa Bra007536 N 0.000
BRADI5G17600 Brachypodium distachyon BRADI5G17600 N 0.000
Cagra.3527s0008 Capsella grandiflora Cagra.3527s0008 N 0.000
Carubv10019483m.g Capsella rubella Carubv10019483m.g N 0.000
cassava17368.m1 Manihot esculenta cassava17368.m1 N 0.000
cassava19913.m1 Manihot esculenta cassava19913.m1 N 0.000
Ca_18954 Cicer arietinum Ca_18954 N 0.000
Ciclev10021345m.g Citrus clementina Ciclev10021345m.g N 0.000
Cla006831 Citrullus lanatus Cla006831 N 0.000
Cucsa.121070 Cucumis sativus Cucsa.121070 N 0.000
DUO1 Vitis vinifera VIT_15s0021g02040 N 0.000
DUO1 Arabidopsis thaliana AT3G60460 N 0.000
DUO1 Arabidopsis lyrata fgenesh2_kg.5__2511__AT3G60460.1 N 0.000
Eucgr.E01581 Eucalyptus grandis Eucgr.E01581 N 0.000
evm.TU.supercontig_37.96 Carica papaya evm.TU.supercontig_37.96 N 0.000
gene04800-v1.0-hybrid Fragaria vesca gene04800-v1.0-hybrid N 0.000
gene12261-v1.0-hybrid Fragaria vesca gene12261-v1.0-hybrid N 0.000
GLYMA03G26830 Glycine max GLYMA03G26830 N 0.000
GLYMA07G14480 Glycine max GLYMA07G14480 N 0.000
GLYMA09G00371 Glycine max GLYMA09G00371 N 0.000
GLYMA12G37026 Glycine max GLYMA12G37026 N 0.000
Gorai.003G112700 Gossypium raimondii Gorai.003G112700 N 0.000
Gorai.004G165400 Gossypium raimondii Gorai.004G165400 N 0.000
GRMZM2G046443 Zea mays GRMZM2G046443 N 0.000
GRMZM2G105137 Zea mays GRMZM2G105137 N 0.000
GRMZM2G311059 Zea mays GRMZM2G311059 N 0.000
LjT36B17.50.nd Lotus japonicus LjT36B17.50.nd N 0.000
LPERR04G16870 Leersia perrieri LPERR04G16870 N 0.000
Lus10009780.g Linum usitatissimum Lus10009780.g N 0.000
MDP0000237596 Malus domestica MDP0000237596 N 0.000
MDP0000319634 Malus domestica MDP0000319634 N 0.000
mgf019330m Mimulus guttatus mgf019330m N 0.000
MTR_4g029540 Medicago truncatula MTR_4g029540 N 0.000
MTR_8g006470 Medicago truncatula MTR_8g006470 N 0.000
OB04G27810 Oryza brachyantha OB04G27810 N 0.000
OB08G27600 Oryza brachyantha OB08G27600 N 0.000
OBART04G20790 Oryza barthii OBART04G20790 N 0.000
OGLUM04G20730 Oryza glumaepatula OGLUM04G20730 N 0.000
OMERI04G17240 Oryza meridionalis OMERI04G17240 N 0.000
ONIVA04G19030 Oryza nivara ONIVA04G19030 N 0.000
OPUNC04G18480 Oryza punctata OPUNC04G18480 N 0.000
orange1.1g038795m.g Citrus sinensis orange1.1g038795m.g N 0.000
ORGLA04G0178400 Oryza glaberrima ORGLA04G0178400 N 0.000
ORUFI04G22380 Oryza rufipogon ORUFI04G22380 N 0.000
Pavir.Fa00479 Panicum virgatum Pavir.Fa00479 N 0.000
Pavir.Fb01900 Panicum virgatum Pavir.Fb01900 N 0.000
Pavir.Gb01130 Panicum virgatum Pavir.Gb01130 N 0.000
Pavir.J30013 Panicum virgatum Pavir.J30013 N 0.000
Pavir.J35399 Panicum virgatum Pavir.J35399 N 0.000
PGSC0003DMG400025720 Solanum tuberosum PGSC0003DMG400025720 N 0.000
Pm017596 Prunus mume Pm017596 N 0.000
Pm019530 Prunus mume Pm019530 N 0.000
Pm031387 Prunus mume Pm031387 N 0.000
POPTR_0002s14180 Populus trichocarpa POPTR_0002s14180 N 0.000
POPTR_0014s05370 Populus trichocarpa POPTR_0014s05370 N 0.000
POPTR_0014s05420 Populus trichocarpa POPTR_0014s05420 N 0.000
PRUPE_ppa016603mg Prunus persica PRUPE_ppa016603mg N 0.000
PRUPE_ppa020326mg Prunus persica PRUPE_ppa020326mg N 0.000
SapurV1A.0033s0200 Salix purpurea SapurV1A.0033s0200 N 0.000
SapurV1A.0490s0170 Salix purpurea SapurV1A.0490s0170 N 0.000
Sb06g024510 Sorghum bicolor Sb06g024510 N 0.000
Sb07g027160 Sorghum bicolor Sb07g027160 N 0.000
Si012032m.g Setaria italica Si012032m.g N 0.000
Si015815m.g Setaria italica Si015815m.g N 0.000
Solyc01g090530.1 Solanum lycopersicum Solyc01g090530.1 N 0.000
Solyc10g019260.1 Solanum lycopersicum Solyc10g019260.1 N 0.000
TCM_005653 Theobroma cacao TCM_005653 N 0.000
TCM_014872 Theobroma cacao TCM_014872 N 0.000
Thhalv10006475m.g Eutrema salsugineum Thhalv10006475m.g N 0.000
Traes_2AL_0A21FB42C Triticum aestivum Traes_2AL_0A21FB42C N 0.000
Traes_2BL_855A1170C Triticum aestivum Traes_2BL_855A1170C N 0.000
Traes_2DL_912473A86 Triticum aestivum Traes_2DL_912473A86 N 0.000