MDP0000199559 (Malus domestica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 MDP0000199559 T143190_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 0.956
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 0.956
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000199559 C2H2 ZF 357 379
MDP0000199559 C2H2 ZF 378 409

Links

Other C2H2 ZF family TFs
Other Malus domestica TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0001082701 Angiostrongylus cantonensis ACAC_0001082701 I 0.000
ACOC_0001282001 Angiostrongylus costaricensis ACOC_0001282001 I 0.000
ACYPI48102 Acyrthosiphon pisum ACYPI48102 I 0.000
BXY_1663900 Bursaphelenchus xylophilus BXY_1663900 N 0.000
CapteG177303 Capitella teleta CapteG177303 I 0.000
CBG09846 Caenorhabditis briggsae CBG09846 I 0.000
CBN10661 Caenorhabditis brenneri CBN10661 I 0.000
CRE25188 Caenorhabditis remanei CRE25188 I 0.000
HelroG148423 Helobdella robusta HelroG148423 I 0.000
HPLM_0002159101 Haemonchus placei HPLM_0002159101 I 0.000
ISCW008659 Ixodes scapularis ISCW008659 I 0.000
L596_g19535 Steinernema carpocapsae L596_g19535 N 0.000
L798_08383 Zootermopsis nevadensis L798_08383 I 0.000
L889_g32531 Steinernema feltiae L889_g32531 I 0.000
L892_g29081 Steinernema scapterisci L892_g29081 N 0.000
LotgiG132791 Lottia gigantea LotgiG132791 I 0.000
nhr-239 Caenorhabditis elegans WBGene00021848 I 0.000
NV10871 Nasonia vitripennis NV10871 I 0.000
Ocbimv22005486m.g Octopus bimaculoides Ocbimv22005486m.g I 0.000
PTRK_0000986400 Parastrongyloides trichosuri PTRK_0000986400 N 0.000
RSKR_0000433000 Rhabditophanes kr3021 RSKR_0000433000 I 0.000
Sakowv30002570m.g Saccoglossus kowalevskii Sakowv30002570m.g I 0.000
SMAR006023 Strigamia maritima SMAR006023 I 0.000
SMUV_0000977701 Syphacia muris SMUV_0000977701 N 0.000
SPU_012586 Strongylocentrotus purpuratus SPU_012586 I 0.000
SSTP_0000371600 Strongyloides stercoralis SSTP_0000371600 N 0.000
SVE_0494600 Strongyloides venezuelensis SVE_0494600 N 0.000
TC010460 Tribolium castaneum TC010460 I 0.000
tetur01g07700 Tetranychus urticae tetur01g07700 I 0.000