snai1 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-479970 T145413_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.761 0.912
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.761 0.912
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.761 0.912
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.761 0.912
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.761 0.912
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.761 0.912
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.761 0.912
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.761 0.912
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.761 0.912
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.761 0.912
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.761 0.912
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.761 0.912
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.757 0.904
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH64223 C2H2 ZF 122 144
AAH64223 C2H2 ZF 153 175
AAH64223 C2H2 ZF 179 201
AAH64223 C2H2 ZF 207 229
AAH64223 C2H2 ZF 235 256
CAJ82788 C2H2 ZF 122 144
CAJ82788 C2H2 ZF 153 175
CAJ82788 C2H2 ZF 179 201
CAJ82788 C2H2 ZF 207 229
CAJ82788 C2H2 ZF 235 256

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAB34088 Xenopus laevis AAB34088 I 0.759
AAK54135 Xenopus tropicalis AAK54135 I 0.759
AAK54137 Xenopus laevis AAK54137 I 0.759
AAK54139 Xenopus laevis AAK54139 I 0.759
Aan_R003278 Calypte anna Aan_R003278 N 0.811
Aan_R012932 Calypte anna Aan_R012932 I 0.759
Afo_R003266 Aptenodytes forsteri Afo_R003266 N 0.811
Afo_R005870 Aptenodytes forsteri Afo_R005870 I 0.759
Alligator_sinensis_CCG001703.1 Alligator sinensis Alligator_sinensis_CCG001703.1 I 0.812
Alligator_sinensis_CCG016283.1 Alligator sinensis Alligator_sinensis_CCG016283.1 I 0.759
Brh_R006038 Buceros rhinoceros Brh_R006038 I 0.759
Cmyd_10017446 Chelonia mydas Cmyd_10017446 I 0.823
ENSAMEG00000009606 Ailuropoda melanoleuca ENSAMEG00000009606 I 0.761
ENSAPLG00000003920 Anas platyrhynchos ENSAPLG00000003920 I 0.759
ENSAPLG00000014633 Anas platyrhynchos ENSAPLG00000014633 N 0.811
ENSCPOG00000014827 Cavia porcellus ENSCPOG00000014827 I 0.761
ENSCSAG00000014787 Chlorocebus sabaeus ENSCSAG00000014787 I 0.761
ENSFALG00000005762 Ficedula albicollis ENSFALG00000005762 I 0.759
ENSFALG00000012974 Ficedula albicollis ENSFALG00000012974 N 0.811
ENSGALG00000015241 Gallus gallus ENSGALG00000015241 I 0.759
ENSLACG00000005413 Latimeria chalumnae ENSLACG00000005413 I 0.759
ENSLACG00000017707 Latimeria chalumnae ENSLACG00000017707 I 0.822
ENSMEUG00000009510 Macropus eugenii ENSMEUG00000009510 I 0.759
ENSMPUG00000010793 Mustela putorius furo ENSMPUG00000010793 I 0.761
ENSNLEG00000013421 Nomascus leucogenys ENSNLEG00000013421 I 0.761
ENSOARG00000013030 Ovis aries ENSOARG00000013030 I 0.758
ENSP00000020945-D1 Bos grunniens ENSP00000020945-D1 I 0.758
ENSP00000380034 Macaca fascicularis ENSP00000380034 I 0.761
ENSPANG00000017540 Papio anubis ENSPANG00000017540 I 0.761
ENSPPYG00000018578 Pongo abelii ENSPPYG00000018578 I 0.761
ENSPSIG00000003607 Pelodiscus sinensis ENSPSIG00000003607 I 0.823
ENSPSIG00000016395 Pelodiscus sinensis ENSPSIG00000016395 I 0.759
ENSSHAG00000004205 Sarcophilus harrisii ENSSHAG00000004205 I 0.759
ENSSSCG00000024404 Sus scrofa ENSSSCG00000024404 I 0.761
ENSSSCG00000026570 Sus scrofa ENSSSCG00000026570 I 0.761
ENSSTOG00000028743 Ictidomys tridecemlineatus ENSSTOG00000028743 I 0.761
Gfo_R009598 Geospiza fortis Gfo_R009598 N 0.811
Gfo_R012649 Geospiza fortis Gfo_R012649 I 0.759
Myotis_brandtii_Snai2_10018131 Myotis brandtii Myotis_brandtii_Snai2_10018131 I 0.761
Ogr04681 Ophisaurus gracilis Ogr04681 I 0.759
Ogr08528 Ophisaurus gracilis Ogr08528 N 0.813
Pvit_03333 Pogona vitticeps Pvit_03333 N 0.813
Pvit_15376 Pogona vitticeps Pvit_15376 I 0.759
SNAI1 Ornithorhynchus anatinus ENSOANG00000008681 N 0.811
SNAI1 Meleagris gallopavo ENSMGAG00000009447 N 0.811
SNAI1 Gallus gallus ENSGALG00000008018 N 0.811
SNAI1 Taeniopygia guttata ENSTGUG00000008724 N 0.811
SNAI1 Anolis carolinensis ENSACAG00000015607 N 0.813
snai1.S Xenopus laevis XB-GENE-865328 I 0.822
SNAI2 Procavia capensis ENSPCAG00000001788 I 0.761
snai2 Xenopus tropicalis XB-GENE-487371 I 0.759
Snai2 Rattus norvegicus ENSRNOG00000047699 I 0.761
SNAI2 Bos taurus ENSBTAG00000013227 I 0.758
SNAI2 Canis familiaris ENSCAFG00000006638 I 0.761
SNAI2 Choloepus hoffmanni ENSCHOG00000007046 I 0.761
SNAI2 Callithrix jacchus ENSCJAG00000013499 I 0.761
SNAI2 Dasypus novemcinctus ENSDNOG00000035997 I 0.761
SNAI2 Equus caballus ENSECAG00000010120 I 0.761
SNAI2 Felis catus ENSFCAG00000015779 I 0.761
SNAI2 Homo sapiens ENSG00000019549 D 0.761
SNAI2 Gorilla gorilla ENSGGOG00000000959 I 0.761
SNAI2 Loxodonta africana ENSLAFG00000009299 I 0.761
SNAI2 Meleagris gallopavo ENSMGAG00000010813 I 0.759
SNAI2 Microcebus murinus ENSMICG00000000335 I 0.761
SNAI2 Myotis lucifugus ENSMLUG00000001086 I 0.761
SNAI2 Macaca mulatta ENSMMUG00000016195 I 0.761
SNAI2 Monodelphis domestica ENSMODG00000010173 I 0.759
Snai2 Mus musculus ENSMUSG00000022676 D 0.761
SNAI2 Ornithorhynchus anatinus ENSOANG00000007267 I 0.759
SNAI2 Oryctolagus cuniculus ENSOCUG00000012254 I 0.761
SNAI2 Otolemur garnettii ENSOGAG00000010500 I 0.761
SNAI2 Anolis carolinensis ENSACAG00000012332 I 0.759
SNAI2 Pan troglodytes ENSPTRG00000020235 I 0.761
SNAI2 Pteropus vampyrus ENSPVAG00000009457 I 0.759
SNAI2 Taeniopygia guttata ENSTGUG00000010914 I 0.759
snai2.L Xenopus laevis XB-GENE-6255814 I 0.759
snai2.S Xenopus laevis XB-GENE-865699 I 0.759
Tal_R003673 Tyto alba Tal_R003673 I 0.759