gli1 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-482644 T145422_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.778 0.939
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.778 0.939
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.778 0.939
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.778 0.939
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.778 0.939
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.778 0.939
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.761 0.922
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.761 0.922
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.761 0.922
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.761 0.922
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.761 0.922
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.761 0.922
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.761 0.922
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.761 0.922
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.761 0.922
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002939471 C2H2 ZF 250 275
XP_002939471 C2H2 ZF 283 310
XP_002939471 C2H2 ZF 316 340
XP_002939471 C2H2 ZF 346 371
XP_002939471 C2H2 ZF 377 402

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003640 Calypte anna Aan_R003640 I 0.773
Aan_R014715 Calypte anna Aan_R014715 I 0.778
Afo_R006826 Aptenodytes forsteri Afo_R006826 I 0.773
Afo_R007816 Aptenodytes forsteri Afo_R007816 I 0.778
Brh_R008256 Buceros rhinoceros Brh_R008256 I 0.778
Brh_R010932 Buceros rhinoceros Brh_R010932 I 0.773
Cmyd_10007839 Chelonia mydas Cmyd_10007839 I 0.778
Cmyd_10009086 Chelonia mydas Cmyd_10009086 I 0.773
ENSAMEG00000008405 Ailuropoda melanoleuca ENSAMEG00000008405 I 0.778
ENSAMEG00000008708 Ailuropoda melanoleuca ENSAMEG00000008708 I 0.761
ENSAMXG00000002477 Astyanax mexicanus ENSAMXG00000002477 I 0.775
ENSAMXG00000003125 Astyanax mexicanus ENSAMXG00000003125 I 0.771
ENSAMXG00000006646 Astyanax mexicanus ENSAMXG00000006646 I 0.771
ENSAMXG00000017236 Astyanax mexicanus ENSAMXG00000017236 I 0.783
ENSAPLG00000004361 Anas platyrhynchos ENSAPLG00000004361 I 0.778
ENSAPLG00000005128 Anas platyrhynchos ENSAPLG00000005128 I 0.776
ENSAPLG00000015141 Anas platyrhynchos ENSAPLG00000015141 I 0.773
ENSCJAG00000013342 Callithrix jacchus ENSCJAG00000013342 I 0.761
ENSCSAG00000015361 Chlorocebus sabaeus ENSCSAG00000015361 I 0.778
ENSCSAG00000016668 Chlorocebus sabaeus ENSCSAG00000016668 I 0.761
ENSFALG00000005113 Ficedula albicollis ENSFALG00000005113 I 0.778
ENSFALG00000013217 Ficedula albicollis ENSFALG00000013217 I 0.773
ENSGALG00000012329 Gallus gallus ENSGALG00000012329 I 0.778
ENSGALG00000014639 Gallus gallus ENSGALG00000014639 I 0.767
ENSLACG00000017364 Latimeria chalumnae ENSLACG00000017364 I 0.778
ENSLOCG00000005938 Lepisosteus oculatus ENSLOCG00000005938 I 0.781
ENSLOCG00000011983 Lepisosteus oculatus ENSLOCG00000011983 I 0.768
ENSMEUG00000013134 Macropus eugenii ENSMEUG00000013134 I 0.778
ENSMGAG00000003540 Meleagris gallopavo ENSMGAG00000003540 I 0.767
ENSMMUP00000002494 Macaca fascicularis ENSMMUP00000002494 I 0.761
ENSMPUG00000000986 Mustela putorius furo ENSMPUG00000000986 I 0.761
ENSMPUG00000018143 Mustela putorius furo ENSMPUG00000018143 I 0.778
ENSNLEG00000000944 Nomascus leucogenys ENSNLEG00000000944 I 0.761
ENSNLEG00000003160 Nomascus leucogenys ENSNLEG00000003160 I 0.778
ENSOARG00000013052 Ovis aries ENSOARG00000013052 I 0.761
ENSOARG00000017420 Ovis aries ENSOARG00000017420 I 0.778
ENSP00000379258 Macaca fascicularis ENSP00000379258 I 0.778
ENSP00000390436-D1 Bos grunniens ENSP00000390436-D1 I 0.761
ENSPANG00000014545 Papio anubis ENSPANG00000014545 I 0.778
ENSPANG00000024168 Papio anubis ENSPANG00000024168 I 0.761
ENSPFOG00000005116 Poecilia formosa ENSPFOG00000005116 I 0.773
ENSPPYG00000012778 Pongo abelii ENSPPYG00000012778 I 0.761
ENSPPYG00000017613 Pongo abelii ENSPPYG00000017613 I 0.778
ENSPSIG00000008752 Pelodiscus sinensis ENSPSIG00000008752 I 0.773
ENSPSIG00000017804 Pelodiscus sinensis ENSPSIG00000017804 I 0.778
ENSSHAG00000004233 Sarcophilus harrisii ENSSHAG00000004233 I 0.763
ENSSHAG00000009727 Sarcophilus harrisii ENSSHAG00000009727 I 0.778
ENSSTOG00000004582 Ictidomys tridecemlineatus ENSSTOG00000004582 I 0.761
ENSTSYG00000009406 Tarsius syrichta ENSTSYG00000009406 I 0.778
ENSXMAG00000006443 Xiphophorus maculatus ENSXMAG00000006443 I 0.773
Gfo_R001212 Geospiza fortis Gfo_R001212 I 0.773
Gfo_R007869 Geospiza fortis Gfo_R007869 I 0.778
Gfo_R013682 Geospiza fortis Gfo_R013682 I 0.776
GLI1 Anolis carolinensis ENSACAG00000006541 I 0.781
gli1 Danio rerio ENSDARG00000101244 I 0.774
gli1.S Xenopus laevis XB-GENE-864895 I 0.827
GLI2 Anolis carolinensis ENSACAG00000004133 I 0.771
GLI2 Bos taurus ENSBTAG00000011682 I 0.761
GLI2 Canis familiaris ENSCAFG00000004821 I 0.761
GLI2 Cavia porcellus ENSCPOG00000015189 I 0.761
GLI2 Dasypus novemcinctus ENSDNOG00000008730 I 0.761
GLI2 Felis catus ENSFCAG00000014531 I 0.761
GLI2 Homo sapiens ENSG00000074047 D 0.761
GLI2 Gallus gallus ENSGALG00000011630 I 0.773
GLI2 Gorilla gorilla ENSGGOG00000009653 I 0.757
GLI2 Meleagris gallopavo ENSMGAG00000011872 I 0.773
GLI2 Macaca mulatta ENSMMUG00000001868 I 0.761
GLI2 Monodelphis domestica ENSMODG00000000245 I 0.763
Gli2 Mus musculus ENSMUSG00000048402 D 0.761
GLI2 Oryctolagus cuniculus ENSOCUG00000000638 I 0.761
GLI2 Otolemur garnettii ENSOGAG00000032438 I 0.766
GLI2 Procavia capensis ENSPCAG00000001704 I 0.759
GLI2 Pan troglodytes ENSPTRG00000012413 I 0.761
Gli2 Rattus norvegicus ENSRNOG00000007261 I 0.761
GLI2 Sus scrofa ENSSSCG00000015733 I 0.761
GLI2 Taeniopygia guttata ENSTGUG00000004599 I 0.773
gli2b Danio rerio ENSDARG00000020884 I 0.771
gli2b Tetraodon nigroviridis ENSTNIG00000010251 I 0.759
gli2b Tetraodon nigroviridis ENSTNIG00000017828 I 0.761
gli2b Takifugu rubripes ENSTRUG00000010444 I 0.771
GLI3 Anolis carolinensis ENSACAG00000017547 I 0.778
GLI3 Bos taurus ENSBTAG00000010671 I 0.778
GLI3 Canis familiaris ENSCAFG00000003535 I 0.778
GLI3 Choloepus hoffmanni ENSCHOG00000003774 I 0.778
GLI3 Callithrix jacchus ENSCJAG00000007690 I 0.778
gli3 Danio rerio ENSDARG00000052131 I 0.775
GLI3 Dasypus novemcinctus ENSDNOG00000049286 I 0.778
GLI3 Equus caballus ENSECAG00000009281 I 0.778
GLI3 Echinops telfairi ENSETEG00000003955 I 0.762
GLI3 Felis catus ENSFCAG00000011989 I 0.778
GLI3 Homo sapiens ENSG00000106571 D 0.778
GLI3 Gorilla gorilla ENSGGOG00000002026 I 0.778
GLI3 Loxodonta africana ENSLAFG00000008944 I 0.778
GLI3 Meleagris gallopavo ENSMGAG00000012277 I 0.778
GLI3 Microcebus murinus ENSMICG00000010785 I 0.762
GLI3 Myotis lucifugus ENSMLUG00000015711 I 0.778
GLI3 Macaca mulatta ENSMMUG00000013614 I 0.778
GLI3 Monodelphis domestica ENSMODG00000002714 I 0.778
GLI3 Ornithorhynchus anatinus ENSOANG00000010699 I 0.778
GLI3 Oryctolagus cuniculus ENSOCUG00000006563 I 0.778
GLI3 Otolemur garnettii ENSOGAG00000012651 I 0.778
GLI3 Ochotona princeps ENSOPRG00000011225 I 0.778
GLI3 Procavia capensis ENSPCAG00000015092 I 0.778
GLI3 Pan troglodytes ENSPTRG00000019117 I 0.778
GLI3 Pteropus vampyrus ENSPVAG00000015920 I 0.778
GLI3 Tupaia belangeri ENSTBEG00000006673 I 0.778
GLI3 Tursiops truncatus ENSTTRG00000003628 I 0.778
gli3.L Xenopus laevis XB-GENE-865509 I 0.778
Myotis_brandtii_Gli2_10019076 Myotis brandtii Myotis_brandtii_Gli2_10019076 I 0.761
Ogr02489 Ophisaurus gracilis Ogr02489 I 0.771
Pvit_05813 Pogona vitticeps Pvit_05813 I 0.781
Pvit_06470 Pogona vitticeps Pvit_06470 I 0.771
Pvit_19093 Pogona vitticeps Pvit_19093 I 0.778
Tal_R006208 Tyto alba Tal_R006208 I 0.773
Tal_R009020 Tyto alba Tal_R009020 I 0.776
XP_002933449 Xenopus tropicalis XP_002933449 I 0.778
XP_002933450 Xenopus tropicalis XP_002933450 I 0.778