XP_002933331 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XP_002933331 T145750_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SP8
M02898_2.00 		Homo sapiens
VMCACBCCCMCH
DGKGGGVGTGKB		 SELEX
Jolma et al.(2013)
SP8_1 		0.827 1.000
SP8
M04517_2.00 		Homo sapiens
NMCMCGCCCMYH
DRKGGGCGKGKN		 SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX 		0.827 1.000
SP8
M04518_2.00 		Homo sapiens
RHCACGCCCMYH
DRKGGGCGTGDY		 SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX 		0.827 1.000
SP9
M04645_2.00 		Homo sapiens
VMCMCGCCCMYH
DRKGGGCGKGKB		 SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX 		0.827 0.986
SP9
M04646_2.00 		Homo sapiens
RYCACGCCCMYH
DRKGGGCGTGRY		 SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX 		0.827 0.986
Sp1
M03682_2.00 		Drosophila melanogaster
HNGCCACGCCCARK
MYTGGGCGTGGCND		 SELEX
Nitta et al.(2015)
Sp1_1 		0.814 0.986
Sp1
M06117_2.00 		Drosophila melanogaster
DHYMCGCCCMY
RKGGGCGKRDH		 B1H
Zhu et al.(2011)
Sp1_SANGER_5_FBgn0020378 		0.814 0.986
Sp1
M06118_2.00 		Drosophila melanogaster
NKHHMCGCCCMYNN
NNRKGGGCGKDDMN		 B1H
Zhu et al.(2011)
Sp1_SOLEXA_2.5_FBgn0020378 		0.814 0.986
Sp5
M09016_2.00 		Mus musculus
CYCCKCCYHYHBCYYHBYYYHYHB
VDRDRRRVDRRGVDRDRGGMGGRG		 Misc
Kulakovskiy et al.(2013)
SP5_MOUSE.H11MO.0.C 		0.794 0.928
SP5
M10319_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP5_Q2 		0.794 0.928
Sp1
M00765_2.00 		Mus musculus
NMCGCCCMY
RKGGGCGKN		 PBM
Weirauch et al.(2013)
pTH0978 		0.774 0.884
Sp1
M08963_2.00 		Mus musculus
CCCBKCYCCKCCCCCNBCYCSBSC
GSVSGRGVNGGGGGMGGRGMVGGG		 Misc
Kulakovskiy et al.(2013)
SP1_MOUSE.H11MO.0.A 		0.774 0.884
Spps
M06159_2.00 		Drosophila melanogaster
KWDRCCMCGCCCMBH
DVKGGGCGKGGYHWM		 B1H
Zhu et al.(2011)
CG5669_SANGER_10_FBgn0039169 		0.771 0.855
Spps
M06160_2.00 		Drosophila melanogaster
BDDGCCMCGCCCMYN
NRKGGGCGKGGCHHV		 B1H
Zhu et al.(2011)
CG5669_SOLEXA_5_FBgn0039169 		0.771 0.855
SP1
M02921_2.00 		Homo sapiens
RCCMCDCCCMH
DKGGGHGKGGY		 SELEX
Jolma et al.(2013)
SP1_1 		0.771 0.870
SP1
M04605_2.00 		Homo sapiens
NWRRCCACGCCCMCH
DGKGGGCGTGGYYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_HT-SELEX 		0.771 0.870
SP1
M08096_2.00 		Homo sapiens
BYCCCKCCCCY
RGGGGMGGGRV		 ChIP-seq
Mathelier et al.(2014)
MA0079.3 		0.771 0.870
SP1
M08363_2.00 		Homo sapiens
CCCHNBCYCCDCCCY
RGGGHGGRGVNDGGG		 ChIP-seq
Schmitges et al.(2016)
P08047.MEME 		0.771 0.870
SP1
M08938_2.00 		Homo sapiens
BCSSSBCCHVGCCCCGCCCCYN
NRGGGGCGGGGCBDGGVSSSGV		 Misc
Kulakovskiy et al.(2013)
SP1_HUMAN.H11MO.0.A 		0.771 0.870
SP1
M10294_2.00 		Homo sapiens
DSCMHGCCYH
DRGGCDKGSH		 Transfac
Matys et al.(2006)
V$SP1_01 		0.771 0.870
SP1
M10295_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_02 		0.771 0.870
SP1
M10296_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_07 		0.771 0.870
SP1
M10297_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_08 		0.771 0.870
SP1
M10298_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q2_02 		0.771 0.870
SP1
M10299_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q3 		0.771 0.870
SP1
M10300_2.00 		Homo sapiens
VVCCCCGCCCMBN
NVKGGGCGGGGBB		 Transfac
Matys et al.(2006)
V$SP1_Q6 		0.771 0.870
SP1
M04606_2.00 		Homo sapiens
NWRGCCMCGCCCMYH
DRKGGGCGKGGCYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_Methyl-HT-SELEX 		0.771 0.870
Sp7
M09009_2.00 		Mus musculus
VHAVCCTRTAATTW
WAATTAYAGGBTDB		 Misc
Kulakovskiy et al.(2013)
SP7_MOUSE.H11MO.0.A 		0.764 0.855
SP7
M10258_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSX_Q3 		0.764 0.855
Sp4
M01862_2.00 		Mus musculus
NMCGCCCMY
RKGGGCGKN		 PBM
Weirauch et al.(2014)
pTH4998 		0.762 0.899
Sp4
M00133_2.00 		Mus musculus
HMCGCCCMYN
NRKGGGCGKD		 PBM
Badis et al.(2009)
Sp4_1011 		0.762 0.899
SP4
M02879_2.00 		Homo sapiens
NWRGCCACGCCCMCHYN
NRDGKGGGCGTGGCYWN		 SELEX
Jolma et al.(2013)
SP4_1 		0.762 0.899
Sp4
M05859_2.00 		Mus musculus
DGNYMCGCCCHNN
NNDGGGCGKRNCH		 SMiLE-seq
Isakova et al.(2017)
SP4 		0.762 0.899
SP4
M08296_2.00 		Homo sapiens
NNVGCYCCKCCYMYH
DRKRGGMGGRGCBNN		 ChIP-seq
Schmitges et al.(2016)
Q02446.MEME 		0.762 0.899
SP4
M08873_2.00 		Homo sapiens
BYHDKCYCCGCCYYYHBSBB
VVSVDRRRGGCGGRGMHDRV		 Misc
Kulakovskiy et al.(2013)
SP4_HUMAN.H11MO.0.A 		0.762 0.899
Sp4
M08975_2.00 		Mus musculus
BYHDKCYCCGCCYYYHBSBB
VVSVDRRRGGCGGRGMHDRV		 Misc
Kulakovskiy et al.(2013)
SP4_MOUSE.H11MO.0.B 		0.762 0.899
SP4
M10165_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP4_Q3 		0.762 0.899
SP4
M10166_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP4_Q5 		0.762 0.899
SP3
M02910_2.00 		Homo sapiens
VCCMCRCCCMY
RKGGGYGKGGB		 SELEX
Jolma et al.(2013)
SP3_1 		0.761 0.870
SP3
M04558_2.00 		Homo sapiens
NRCCACGCCCMYH
DRKGGGCGTGGYN		 SELEX
Yin et al.(2017)
SP3_eDBD_HT-SELEX 		0.761 0.870
SP3
M08920_2.00 		Homo sapiens
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN		 Misc
Kulakovskiy et al.(2013)
SP3_HUMAN.H11MO.0.B 		0.761 0.870
SP3
M10263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP3_Q3_01 		0.761 0.870
SP3
M10264_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP3_Q3 		0.761 0.870
SP3
M04559_2.00 		Homo sapiens
NRCCMCGCCCMCH
DGKGGGCGKGGYN		 SELEX
Yin et al.(2017)
SP3_eDBD_Methyl-HT-SELEX 		0.761 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002933331 C2H2 ZF 387 411
XP_002933331 C2H2 ZF 417 441
XP_002933331 C2H2 ZF 447 469

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

587 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000017547 Ailuropoda melanoleuca ENSAMEG00000017547 I 0.000
ENSAMXG00000025848 Astyanax mexicanus ENSAMXG00000025848 I 0.000
ENSBTAP00000008406-D1 Bos grunniens ENSBTAP00000008406-D1 I 0.000
ENSCSAG00000018473 Chlorocebus sabaeus ENSCSAG00000018473 I 0.000
ENSFALG00000007023 Ficedula albicollis ENSFALG00000007023 I 0.000
ENSLACG00000016376 Latimeria chalumnae ENSLACG00000016376 I 0.000
ENSLOCG00000017596 Lepisosteus oculatus ENSLOCG00000017596 I 0.000
ENSMPUG00000019895 Mustela putorius furo ENSMPUG00000019895 I 0.000
ENSOARG00000010537 Ovis aries ENSOARG00000010537 I 0.000
ENSONIG00000021394 Oreochromis niloticus ENSONIG00000021394 I 0.000
ENSPANG00000011972 Papio anubis ENSPANG00000011972 I 0.000
ENSPFOG00000020599 Poecilia formosa ENSPFOG00000020599 I 0.000
ENSPPYG00000007471 Pongo abelii ENSPPYG00000007471 I 0.000
ENSSTOG00000021807 Ictidomys tridecemlineatus ENSSTOG00000021807 I 0.000
ENSXMAG00000019795 Xiphophorus maculatus ENSXMAG00000019795 I 0.000
Myotis_brandtii_Thap11_10015084 Myotis brandtii Myotis_brandtii_Thap11_10015084 I 0.000
Pvit_14747 Pogona vitticeps Pvit_14747 I 0.000
THAP11 Sus scrofa ENSSSCG00000002769 I 0.000
THAP11 Sorex araneus ENSSARG00000013268 I 0.000
Thap11 Rattus norvegicus ENSRNOG00000019109 I 0.000
thap11 Tetraodon nigroviridis ENSTNIG00000009306 I 0.000
THAP11 Pteropus vampyrus ENSPVAG00000016604 I 0.000
THAP11 Pan troglodytes ENSPTRG00000008247 I 0.000
thap11 Xenopus tropicalis XB-GENE-5954792 I 0.000
thap11 Oryzias latipes ENSORLG00000008903 I 0.000
THAP11 Ornithorhynchus anatinus ENSOANG00000006140 I 0.000
THAP11 Oryctolagus cuniculus ENSOCUG00000009342 I 0.000
THAP11 Bos taurus ENSBTAG00000006411 I 0.000
THAP11 Canis familiaris ENSCAFG00000020344 I 0.000
THAP11 Choloepus hoffmanni ENSCHOG00000008297 I 0.000
THAP11 Cavia porcellus ENSCPOG00000001016 I 0.000
thap11 Danio rerio ENSDARG00000036055 I 0.000
THAP11 Dasypus novemcinctus ENSDNOG00000009718 I 0.000
THAP11 Felis catus ENSFCAG00000012850 I 0.000
THAP11 Homo sapiens ENSG00000168286 D 0.000
thap11 Gasterosteus aculeatus ENSGACG00000015879 I 0.000
THAP11 Gorilla gorilla ENSGGOG00000013846 I 0.000
THAP11 Microcebus murinus ENSMICG00000012247 I 0.000
THAP11 Myotis lucifugus ENSMLUG00000005845 I 0.000
THAP11 Macaca mulatta ENSMMUG00000013240 I 0.000
THAP11 Monodelphis domestica ENSMODG00000005522 I 0.000
Thap11 Mus musculus ENSMUSG00000036442 D 0.000
THAP11 Otolemur garnettii ENSOGAG00000034339 I 0.000
thap11.L Xenopus laevis XB-GENE-5954813 I 0.000