PXEA_0001261301 (Protopolystoma xenopodis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PXEA_0001261301 T155807_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sens
M03666_2.00 		Drosophila melanogaster
TGCWSTGATTTATY
RATAAATCASWGCA		 SELEX
Nitta et al.(2015)
sens_1 		0.784 0.837
sens
M06056_2.00 		Drosophila melanogaster
AAATCACDGC
GCHGTGATTT		 B1H
Zhu et al.(2011)
sens_SANGER_10_FBgn0002573 		0.784 0.837
sens
M06057_2.00 		Drosophila melanogaster
NNNNAAATCACRGCH
DGCYGTGATTTNNNN		 B1H
Zhu et al.(2011)
sens_SOLEXA_5_FBgn0002573 		0.784 0.837
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PXEA_0001261301-mRNA-1 C2H2 ZF 315 337
PXEA_0001261301-mRNA-1 C2H2 ZF 343 365
PXEA_0001261301-mRNA-1 C2H2 ZF 418 440
PXEA_0001261301-mRNA-1 C2H2 ZF 446 469

Links

Other C2H2 ZF family TFs
Other Protopolystoma xenopodis TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB08131.1 Alternaria brassicicola AB08131.1 N
AB10540.1 Alternaria brassicicola AB10540.1 N
AUEXF2481DRAFT_450827 Aureobasidium subglaciale AUEXF2481DRAFT_450827 N
BAUCODRAFT_79827 Baudoinia compniacensis BAUCODRAFT_79827 N
COCC4DRAFT_194294 Bipolaris maydis COCC4DRAFT_194294 N
COCCADRAFT_22008 Bipolaris zeicola COCCADRAFT_22008 N
COCMIDRAFT_26521 Bipolaris oryzae COCMIDRAFT_26521 N
COCSADRAFT_147534 Bipolaris sorokiniana COCSADRAFT_147534 N
COCVIDRAFT_33489 Bipolaris victoriae COCVIDRAFT_33489 N
fgenesh1_pg.C_scaffold_14000107 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_14000107 N
LEMA_P063520.1 Leptosphaeria maculans LEMA_P063520.1 N
M437DRAFT_74830 Aureobasidium melanogenum M437DRAFT_74830 N
MPH_08084 Macrophomina phaseolina MPH_08084 N
PTRG_08751 Pyrenophora triticirepentis PTRG_08751 N
PTT_14570 Pyrenophora teres PTT_14570 N
SETTUDRAFT_182079 Setosphaeria turcica SETTUDRAFT_182079 N
SNOG_03792 Phaeosphaeria nodorum SNOG_03792 N
SNOG_03792 Stagonospora nodorum SNOG_03792 N