POPTR_0007s05410 (Populus trichocarpa)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03859 (CG-1) IPR005559 POPTR_0007s05410 T163338_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CMTA3
M01900_2.00 		Arabidopsis thaliana
VCGYGTNNN
NNNACRCGB		 PBM
Weirauch et al.(2014)
pTH8209 		0.851 0.851
CMTA2
M01901_2.00 		Arabidopsis thaliana
NNDVCGYGT
ACRCGBHNN		 PBM
Weirauch et al.(2014)
pTH7506 		0.842 0.842
EICBP.B
M06828_2.00 		Arabidopsis thaliana
DARVCGCGTKDD
HHMACGCGBYTH		 Dap-seq
OMalley et al.(2016)
CAMTA1_col_a 		0.789 0.789
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s05410.1 CG-1 21 135
POPTR_0007s05410.2 CG-1 21 135

Links

Other CG-1 family TFs
Other Populus trichocarpa TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB06937.1 Alternaria brassicicola AB06937.1 N 0.000
AOL_s00076g81 Arthrobotrys oligospora AOL_s00076g81 I 0.000
AUEXF2481DRAFT_32739 Aureobasidium subglaciale AUEXF2481DRAFT_32739 I 0.000
aug1.126_g21700 Bigelowiella natans aug1.126_g21700 N 0.000
Bcin01g08840 Botrytis cinerea Bcin01g08840 I 0.000
COCC4DRAFT_59869 Bipolaris maydis COCC4DRAFT_59869 N 0.000
COCCADRAFT_2680 Bipolaris zeicola COCCADRAFT_2680 N 0.000
COCMIDRAFT_6607 Bipolaris oryzae COCMIDRAFT_6607 N 0.000
COCSADRAFT_342303 Bipolaris sorokiniana COCSADRAFT_342303 N 0.000
COCVIDRAFT_22007 Bipolaris victoriae COCVIDRAFT_22007 N 0.000
DRE_06603 Drechslerella stenobrocha DRE_06603 I 0.000
estExt_fgenesh1_pg.C_150217 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_150217 N 0.000
estExt_fgeneshMC_pg.C_20910 Mucor circinelloides estExt_fgeneshMC_pg.C_20910 I 0.000
GMDG_05273 Pseudogymnoascus destructans GMDG_05273 I 0.000
gw1.72.30.1 Phycomyces blakesleeanus gw1.72.30.1 I 0.000
LEMA_P000900.1 Leptosphaeria maculans LEMA_P000900.1 N 0.000
M437DRAFT_15090 Aureobasidium melanogenum M437DRAFT_15090 I 0.000
M438DRAFT_338286 Aureobasidium pullulans M438DRAFT_338286 I 0.000
MELLADRAFT_85039 Melampsora laricipopulina MELLADRAFT_85039 I 0.000
MVLG_01270 Microbotryum violaceum MVLG_01270 I 0.000
PAAG_05470 Paracoccidioides sp lutzii PAAG_05470 N 0.000
PABG_05916 Paracoccidioides brasiliensis PABG_05916 N 0.000
PTRG_02598 Pyrenophora triticirepentis PTRG_02598 N 0.000
PTT_13179 Pyrenophora teres PTT_13179 N 0.000
PV09_06039 Verruconis gallopava PV09_06039 N 0.000
PVAR5_2976 Byssochlamys spectabilis PVAR5_2976 N 0.000
RO3G_07013 Rhizopus oryzae RO3G_07013 I 0.000
RO3G_07543 Rhizopus oryzae RO3G_07543 I 0.000
RO3G_09728 Rhizopus oryzae RO3G_09728 I 0.000
RO3G_15755 Rhizopus oryzae RO3G_15755 I 0.000
SAPIO_CDS3355 Scedosporium apiospermum SAPIO_CDS3355 I 0.000
SETTUDRAFT_168734 Setosphaeria turcica SETTUDRAFT_168734 N 0.000
SNOG_01716 Stagonospora nodorum SNOG_01716 N 0.000
UCRNP2_5474 Neofusicoccum parvum UCRNP2_5474 N 0.000
V499_08602 Pseudogymnoascus pannorum V499_08602 I 0.000
W97_04667 Coniosporium apollinis W97_04667 N 0.000