LIN28B (Homo sapiens)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSG00000187772 T164569_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00		 Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX		 (Direct) (Direct)
LIN28B
M04664_2.00		 Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000344401 CSD 30 102

Links

Other CSD family TFs
Other Homo sapiens TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB05056.1 Alternaria brassicicola AB05056.1 N
AFUA_4G11850 Aspergillus fumigatus CADAFUAG00008171 N
CIMG_01608 Coccidioides immitis CIMG_01608 N
COCC4DRAFT_137441 Bipolaris maydis COCC4DRAFT_137441 N
COCCADRAFT_105405 Bipolaris zeicola COCCADRAFT_105405 N
COCMIDRAFT_94153 Bipolaris oryzae COCMIDRAFT_94153 N
COCSADRAFT_324435 Bipolaris sorokiniana COCSADRAFT_324435 N
COCVIDRAFT_95708 Bipolaris victoriae COCVIDRAFT_95708 N
CPC735_048660 Coccidioides posadasii CPC735_048660 N
e_gw1.9.820.1 Cochliobolus heterostrophus C5 e_gw1.9.820.1 N
fgenesh1_pg.C_scaffold_1000879 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_1000879 N
gw1.82.77.1 Nectria haematococca gw1.82.77.1 N
MYCFIDRAFT_76004 Pseudocercospora fijiensis MYCFIDRAFT_76004 N
NechaG1963 Fusarium solani NechaG1963 N
NFIA_104380 Neosartorya fischeri CADNFIAG00009977 N
PDE_08558 Penicillium oxalicum PDE_08558 I
PMAA_041870 Penicillium marneffei PMAA_041870 I
PMAA_041870 Talaromyces marneffei PMAA_041870 I
PTRG_06548 Pyrenophora triticirepentis PTRG_06548 N
PVAR5_3215 Byssochlamys spectabilis PVAR5_3215 I
SETTUDRAFT_160687 Setosphaeria turcica SETTUDRAFT_160687 N
TSTA_076120 Talaromyces stipitatus TSTA_076120 I
VHEMI01402 Torrubiella hemipterigena VHEMI01402 N
VHEMI07932 Torrubiella hemipterigena VHEMI07932 N