Lin28a (Mus musculus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSMUSG00000050966 T164655_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.864 0.864
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.864 0.864
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000050488 CSD 40 112
ENSMUSP00000135254 CSD 1 32
ENSMUSP00000135608 CSD 1 32
ENSMUSP00000135736 CSD 1 62

Links

Other CSD family TFs
Other Mus musculus TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00594 Capronia coronata A1O1_00594 I
A1O5_08185 Cladophialophora psammophila A1O5_08185 N
ANIA_05691 Aspergillus nidulans CADANIAG00003374 I
ATEG_08244 Aspergillus terreus CADATEAG00003887 N
BBA_01514 Beauveria bassiana BBA_01514 I
BDDG_05568 Blastomyces dermatitidis BDDG_05568 N
CCM_04341 Cordyceps militaris CCM_04341 I
CLUG_01645 Clavispora lusitaniae CLUG_01645 N
CLUG_01645 Candida lusitaniae CLUG_01645 N
COCMIDRAFT_107123 Bipolaris oryzae COCMIDRAFT_107123 I
fgenesh1_pg.C_chr_6.1000096 Pichia stipitis fgenesh1_pg.C_chr_6.1000096 I
fgenesh1_pm.00168_#_452 Aspergillus carbonarius fgenesh1_pm.00168_#_452 I
FVEG_08195 Fusarium verticillioides FVEG_08195 N
GMDG_04293 Pseudogymnoascus destructans GMDG_04293 I
HCBG_03369 Histoplasma capsulatum HCBG_03369 N
HPODL_04541 Ogataea parapolymorpha HPODL_04541 N
KUCA_T00002773001 Kuraishia capsulata KUCA_T00002773001 I
Kwal_6732 Kluyveromyces waltii Kwal_6732 I
LELG_02863 Lodderomyces elongisporus LELG_02863 N
M438DRAFT_64434 Aureobasidium pullulans M438DRAFT_64434 I
MPH_01921 Macrophomina phaseolina MPH_01921 I
NFIA_040650 Neosartorya fischeri CADNFIAG00003354 I
OIDMADRAFT_160412 Oidiodendron maius OIDMADRAFT_160412 N
PAAG_02753 Paracoccidioides sp lutzii PAAG_02753 N
PABG_03226 Paracoccidioides brasiliensis PABG_03226 N
Pc12g02800 Penicillium chrysogenum Pc12g02800 N
PDE_06431 Penicillium oxalicum PDE_06431 N
PEX1_064660 Penicillium expansum PEX1_064660 N
PFICI_05184 Pestalotiopsis fici PFICI_05184 I
PICST_32615 Scheffersomyces stipitis PICST_32615 I
PV04_10066 Capronia semiimmersa PV04_10066 I
PV05_03077 Exophiala xenobiotica PV05_03077 I
PV06_08173 Exophiala oligosperma PV06_08173 N
PV07_01234 Cladophialophora immunda PV07_01234 I
PV07_04955 Cladophialophora immunda PV07_04955 N
PV08_05182 Exophiala spinifera PV08_05182 N
PV11_05379 Exophiala sideris PV11_05379 N
SNOG_09854 Stagonospora nodorum SNOG_09854 I
SNOG_09854 Phaeosphaeria nodorum SNOG_09854 I
SPAPADRAFT_61965 Spathaspora passalidarum SPAPADRAFT_61965 N
SPOG_02829 Schizosaccharomyces cryophilus SPOG_02829 I
TRIATDRAFT_13008 Trichoderma atroviride TRIATDRAFT_13008 I
V499_04479 Pseudogymnoascus pannorum V499_04479 N
VHEMI02369 Torrubiella hemipterigena VHEMI02369 N
Z519_01437 Cladophialophora bantiana Z519_01437 I
Z519_09408 Cladophialophora bantiana Z519_09408 N